Cluster no. 97

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Cluster is part of supercluster: 2

Cluster characteristics:

size	3389
size_real	3389
ecount	345109
supercluster	2
annotations_summary	56.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 7.73% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 1.42% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.62% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT 0.50% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH 0.27% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT 0.21% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH 0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH 0.09% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 0.03% 5S_rDNA/5S_rDNA 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness	0.581427904806346
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00118028917084686
satellite_probability	1.00051650786948e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1130
S4	1160
S6	1100

comparative analysis - number of edges between species:

	S5	S4	S6
S5	37800	39000	37400
S4	39000	40300	38700
S6	37400	38700	36800

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	0.999	1.000
S4	0.999	0.998	1.000
S6	1.000	1.000	0.996

protein domains:

Reads annotation summary

cl_string domain Freq proportion

5S_rDNA 5S_rDNA 1 0.00030

Reina Ty3-GAG Reina Ty3-GAG 2 0.00059

Tekay Ty3-INT Tekay Ty3-INT 1 0.00030

Athila Ty3-RH Athila Ty3-RH 17 0.00502

CRM Ty3-RH CRM Ty3-RH 3 0.00089

Reina Ty3-RH Reina Ty3-RH 3 0.00089

TatV Ty3-RH TatV Ty3-RH 7 0.00207

Tekay Ty3-RH Tekay Ty3-RH 1903 0.56152

Athila Ty3-RT Athila Ty3-RT 21 0.00620

CRM Ty3-RT CRM Ty3-RT 1 0.00030

Galadriel Ty3-RT Galadriel Ty3-RT 9 0.00266

Reina Ty3-RT Reina Ty3-RT 48 0.01416

Tekay Ty3-RT Tekay Ty3-RT 262 0.07731

clusters with similarity:

Cluster	Number of similarity hits

101	8350
70	4140
67	32
165	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

70	395	0.425
101	389	0.441
102	7	0.00702
105	6	0.00676
7	4	0.00154
67	4	0.00462
10	3	0.00112
2	2	0.000565
45	2	0.00137
48	2	0.00165
103	2	0.0017
1	1	0.000265
3	1	0.000379
6	1	0.000251
19	1	0.000511
23	1	0.000359
49	1	0.000633
57	1	0.000638
59	1	0.000733
61	1	0.00061
62	1	0.00105
66	1	0.000957
83	1	0.000649
84	1	0.000869
96	1	0.000979
99	1	0.000898
111	1	0.00142
113	1	0.00113
132	1	0.00166
165	1	0.00177
790	1	0.00222
1290	1	0.00221
2520	1	0.00221
3720	1	0.00222
5280	1	0.00222
8800	1	0.00222
44600	1	0.00222

CL97 ----> CL70

No. of shared pairs: :395

CL97 ----> CL101

No. of shared pairs: :389