Cluster no. 96

Cluster no. 96

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Cluster is part of supercluster: 2

Cluster characteristics:

size	3440
size_real	3440
ecount	54209
supercluster	2
annotations_summary	0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH 0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
pair_completeness	0.500218054949847
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.147383720930233
satellite_probability	5.88374107085122e-14
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1120
S4	1170
S6	1150

comparative analysis - number of edges between species:

	S5	S4	S6
S5	5090	5960	5480
S4	5960	7260	6520
S6	5480	6520	5940

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.010	0.991	1.000
S4	0.991	1.010	0.998
S6	1.000	0.998	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

SIRE Ty1-RH SIRE Ty1-RH 1 0.00029

Ivana Ty1-RT Ivana Ty1-RT 1 0.00029

clusters with similarity:

Cluster	Number of similarity hits

3	1630
24	301
18	217
50	24

clusters connected through mates:

Cluster	Number of shared read pairs	k

3	468	0.169
24	265	0.157
26	17	0.00651
18	12	0.00669
1	7	0.0018
32	6	0.00317
63	4	0.00234
49	3	0.00176
2080	3	0.0052
3220	3	0.00522
5280	3	0.00522
9380	3	0.00522
2	2	0.000546
7	2	0.000735
10	2	0.000714
34	2	0.00195
117	2	0.00188
218	2	0.00314
3800	2	0.00348
6780	2	0.00348
10600	2	0.00348
11100	2	0.00348
46800	2	0.00348
47000	2	0.00348
4	1	0.000268
6	1	0.000243
8	1	0.000385
12	1	0.000301
13	1	0.000496
15	1	0.000649
16	1	0.000611
20	1	0.000451
29	1	0.00036
33	1	0.000716
54	1	0.000634
56	1	0.000582
58	1	0.000567
59	1	0.000671
60	1	0.00119
69	1	0.000808
84	1	0.000784
90	1	0.000943
97	1	0.000979
107	1	0.00129
109	1	0.000849
113	1	0.000992
124	1	0.00166
132	1	0.00138
168	1	0.00141
1820	1	0.00173
5040	1	0.00174
8070	1	0.00174
10900	1	0.00174
17700	1	0.00174
19700	1	0.00174
22300	1	0.00174
38000	1	0.00174
39200	1	0.00174
39600	1	0.00174
44200	1	0.00174
46500	1	0.00174

CL96 ----> CL3

No. of shared pairs: :468

CL96 ----> CL24

No. of shared pairs: :265

CL96 ----> CL26

No. of shared pairs: :17

CL96 ----> CL18

No. of shared pairs: :12