Cluster no. 94

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Cluster is part of supercluster: 3

Cluster characteristics:

size 3480
size_real 3480
ecount 38697
supercluster 3
annotations_summary 4.51% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.46% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.03% Class_I/pararetrovirus:PARA-PROT
0.03% 45S_rDNA/25S_rDNA
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.03% organelle/plastid
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
pair_completeness 0.366313309776207
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00028735632183908
satellite_probability 8.09461165944467e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1230
S4 1110
S6 1140
comparative analysis - number of edges between species:
S5 S4 S6
S5 5660 4290 4730
S4 4290 3490 3720
S6 4730 3720 4080
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.020 0.984 0.996
S4 0.984 1.020 0.999
S6 0.996 0.999 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
25S_rDNA 25S_rDNA 1 0.00029
plastid plastid 1 0.00029
pararetrovirus PARA-PROT pararetrovirus PARA-PROT 1 0.00029
Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00029
CRM Ty3-GAG CRM Ty3-GAG 16 0.00460
Reina Ty3-GAG Reina Ty3-GAG 1 0.00029
TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 1 0.00029
Tekay Ty3-GAG Tekay Ty3-GAG 157 0.04511
TatV Ty3-INT TatV Ty3-INT 1 0.00029
Tekay Ty3-RH Tekay Ty3-RH 2 0.00057

clusters with similarity:

Cluster Number of similarity hits
11 817
35 145
104 6
56 3
16 1
26 1
111 1
153 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
11 606 0.206
35 201 0.109
111 42 0.0395
1 8 0.00194
20 8 0.00326
8 7 0.00247
73 6 0.00355
17 5 0.00218
33 5 0.00307
56 5 0.00256
87 5 0.00358
5 4 0.00132
10 4 0.00132
39 4 0.00258
44 4 0.003
58 4 0.002
104 4 0.00273
729 4 0.0049
9 3 0.00155
16 3 0.0016
19 3 0.0013
57 3 0.00156
72 3 0.00167
90 3 0.00232
115 3 0.00226
2 2 0.000513
4 2 0.000504
7 2 0.000677
27 2 0.00117
29 2 0.000665
30 2 0.000826
41 2 0.00106
42 2 0.00116
45 2 0.0011
54 2 0.0011
121 2 0.00167
332 2 0.00245
2280 2 0.00247
11400 2 0.00247
12100 2 0.00247
13700 2 0.00247
21600 2 0.00248
36100 2 0.00248
40300 2 0.00248
45300 2 0.00248
3 1 0.000334
6 1 0.00023
14 1 0.00051
15 1 0.000563
21 1 0.000328
22 1 0.00062
23 1 0.000318
24 1 0.00052
25 1 0.000704
26 1 0.000351
28 1 0.000407
32 1 0.00047
36 1 0.000536
40 1 0.000602
49 1 0.000516
51 1 0.000546
52 1 0.000614
55 1 0.000547
59 1 0.00058
60 1 0.000931
61 1 0.000501
62 1 0.000764
65 1 0.000713
66 1 0.000713
75 1 0.000759
76 1 0.00077
78 1 0.000731
79 1 0.000838
81 1 0.00057
83 1 0.000526
84 1 0.000662
85 1 0.000921
86 1 0.000709
88 1 0.000907
98 1 0.000641
99 1 0.000679
100 1 0.000917
101 1 0.000806
102 1 0.000738
103 1 0.000653
112 1 0.000702
113 1 0.000805
116 1 0.00118
120 1 0.000854
122 1 0.000834
130 1 0.000888
135 1 0.00103
136 1 0.00105
137 1 0.000851
138 1 0.000941
139 1 0.000931
142 1 0.00085
147 1 0.000947
150 1 0.000937
168 1 0.00106
174 1 0.00116
216 1 0.00118
234 1 0.00118
263 1 0.00123
311 1 0.0012
325 1 0.0012
341 1 0.00122
784 1 0.00123
849 1 0.00123
1560 1 0.00123
2050 1 0.00123
2410 1 0.00124
2420 1 0.00124
3430 1 0.00124
3440 1 0.00124
3470 1 0.00123
3640 1 0.00124
3680 1 0.00124
5000 1 0.00124
5110 1 0.00124
5460 1 0.00124
6750 1 0.00124
7550 1 0.00124
8790 1 0.00124
9000 1 0.00124
9160 1 0.00124
9250 1 0.00124
9370 1 0.00124
10000 1 0.00124
10100 1 0.00124
12500 1 0.00124
12700 1 0.00124
13700 1 0.00124
14900 1 0.00124
16100 1 0.00124
18800 1 0.00124
19700 1 0.00124
20600 1 0.00124
21000 1 0.00124
21600 1 0.00124
22900 1 0.00124
24300 1 0.00124
24400 1 0.00124
28600 1 0.00124
28800 1 0.00124
29700 1 0.00124
30500 1 0.00124
31400 1 0.00124
31800 1 0.00124
33300 1 0.00124
35600 1 0.00124
38500 1 0.00124
41600 1 0.00124
42300 1 0.00124
42800 1 0.00124
43900 1 0.00124
46600 1 0.00124

CL94 ----> CL11

image

No. of shared pairs: :606

CL94 ----> CL35

image

No. of shared pairs: :201

CL94 ----> CL111

image

No. of shared pairs: :42