Cluster no. 93

Cluster no. 93

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Cluster is part of supercluster: 5

Cluster characteristics:

size	3515
size_real	3515
ecount	127023
supercluster	5
annotations_summary	0.06% Class_I/LTR/Ty1_copia/TAR:Ty1-INT 0.06% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT 0.03% organelle/plastid 0.03% Class_II/Subclass_1/TIR/hAT:hAT-TPase
pair_completeness	0.545054945054945
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00142247510668563
satellite_probability	1.46614129999921e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1180
S4	1190
S6	1140

comparative analysis - number of edges between species:

	S5	S4	S6
S5	14200	14200	13900
S4	14200	14400	14200
S6	13900	14200	13900

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.010	0.995	0.996
S4	0.995	1.000	1.000
S6	0.996	1.000	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00028

Ikeros Ty1-INT Ikeros Ty1-INT 2 0.00057

TAR Ty1-INT TAR Ty1-INT 2 0.00057

hAT hAT-TPase hAT hAT-TPase 1 0.00028

clusters with similarity:

Cluster	Number of similarity hits

47	1650
139	75
16	14
193	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

47	482	0.368
16	229	0.145
139	44	0.0561
550	7	0.0133
1750	6	0.0115
32	5	0.00272
54	3	0.00197
1460	3	0.00574
2420	3	0.00577
2560	3	0.00576
10500	3	0.00578
27	2	0.00141
35	2	0.00129
37	2	0.00134
73	2	0.00143
117	2	0.00198
311	2	0.00368
435	2	0.00378
3710	2	0.00385
3820	2	0.00385
3960	2	0.00385
4230	2	0.00385
12300	2	0.00385
12700	2	0.00385
21100	2	0.00386
25700	2	0.00386
31500	2	0.00386
36600	2	0.00386
2	1	0.000277
7	1	0.000375
8	1	0.000394
11	1	0.000378
19	1	0.000494
20	1	0.000463
24	1	0.000613
30	1	0.000469
38	1	0.000962
49	1	0.000606
63	1	0.000604
72	1	0.000663
78	1	0.000927
119	1	0.00103
168	1	0.00153
193	1	0.00176
225	1	0.00177
391	1	0.00187
641	1	0.00191
1510	1	0.00192
2620	1	0.00192
2910	1	0.00193
3120	1	0.00192
6200	1	0.00192
6640	1	0.00192
7610	1	0.00193
7820	1	0.00193
7840	1	0.00193
8220	1	0.00193
8800	1	0.00193
9110	1	0.00193
9300	1	0.00193
9460	1	0.00193
9870	1	0.00193
10600	1	0.00193
11300	1	0.00193
13200	1	0.00193
14900	1	0.00193
18700	1	0.00193
20100	1	0.00193
21100	1	0.00193
21400	1	0.00193
23000	1	0.00193
23100	1	0.00193
23900	1	0.00193
30700	1	0.00193
30800	1	0.00193
33000	1	0.00193
36100	1	0.00193
37400	1	0.00193
42200	1	0.00193
43000	1	0.00193
44300	1	0.00193
46900	1	0.00193
48100	1	0.00193

CL93 ----> CL47

No. of shared pairs: :482

CL93 ----> CL16

No. of shared pairs: :229

CL93 ----> CL139

No. of shared pairs: :44