Cluster no. 92

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Cluster is part of supercluster: 6

Cluster characteristics:

size	3522
size_real	3522
ecount	59381
supercluster	6
annotations_summary	5.65% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 0.45% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT 0.09% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT 0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT 0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT 0.06% Class_I/pararetrovirus:PARA-RT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT 0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.03% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase 0.03% Class_I/LINE:LINE-RT
pair_completeness	0.795107033639144
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000851788756388416
satellite_probability	2.63652108321905e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1200
S4	1240
S6	1090

comparative analysis - number of edges between species:

	S5	S4	S6
S5	6590	7100	6150
S4	7100	7410	6630
S6	6150	6630	5630

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.994	1.010	1.000
S4	1.010	0.985	1.010
S6	1.000	1.010	0.987

protein domains:

Reads annotation summary

cl_string domain Freq proportion

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 0.00028

LINE LINE-RT LINE LINE-RT 1 0.00028

pararetrovirus PARA-RT pararetrovirus PARA-RT 2 0.00057

Ivana Ty1-INT Ivana Ty1-INT 1 0.00028

Reina Ty3-CHDII Reina Ty3-CHDII 1 0.00028

CRM Ty3-GAG CRM Ty3-GAG 1 0.00028

TatV Ty3-GAG TatV Ty3-GAG 1 0.00028

Tekay Ty3-GAG Tekay Ty3-GAG 16 0.00454

TatII Ty3-INT TatII Ty3-INT 1 0.00028

Athila Ty3-RT Athila Ty3-RT 2 0.00057

CRM Ty3-RT CRM Ty3-RT 3 0.00085

Chlamyvir Ty3-RT Chlamyvir Ty3-RT 5 0.00142

Galadriel Ty3-RT Galadriel Ty3-RT 2 0.00057

Reina Ty3-RT Reina Ty3-RT 3 0.00085

Tcn1 Ty3-RT Tcn1 Ty3-RT 3 0.00085

Tekay Ty3-RT Tekay Ty3-RT 199 0.05650

clusters with similarity:

Cluster	Number of similarity hits

103	150
59	118
89	8
221	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

103	100	0.108
59	69	0.0617
221	10	0.0424
89	9	0.018
360	6	0.0281
14	3	0.00221
3930	3	0.0147
4710	3	0.0148
56	2	0.00149
218	2	0.00756
3620	2	0.00988
6090	2	0.00985
10100	2	0.00988
15100	2	0.0099
28400	2	0.0099
28800	2	0.0099
46700	2	0.0099
1	1	0.000284
5	1	0.000414
6	1	0.000267
16	1	0.000791
17	1	0.000591
26	1	0.000446
51	1	0.000815
60	1	0.00214
66	1	0.00125
78	1	0.00131
80	1	0.0026
88	1	0.00202
116	1	0.00417
136	1	0.00291
146	1	0.00444
147	1	0.00222
203	1	0.00434
3220	1	0.0049
9310	1	0.00494
10100	1	0.00494
10200	1	0.00494
14000	1	0.00495
15800	1	0.00495
20800	1	0.00495
25200	1	0.00495
28500	1	0.00495
29800	1	0.00495
30700	1	0.00495
30800	1	0.00495
41100	1	0.00495
46000	1	0.00495

CL92 ----> CL103

No. of shared pairs: :100

CL92 ----> CL59

No. of shared pairs: :69

CL92 ----> CL221

No. of shared pairs: :10