Cluster no. 91

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Cluster is part of supercluster: 31

Cluster characteristics:

size 3544
size_real 3544
ecount 100772
supercluster 31
annotations_summary 39.28% 45S_rDNA/25S_rDNA
25.08% 45S_rDNA/18S_rDNA
2.57% 45S_rDNA/5.8S_rDNA
pair_completeness 0.951541850220264
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00141083521444695
satellite_probability 9.65575059629727e-25
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1220
S4 1140
S6 1180
comparative analysis - number of edges between species:
S5 S4 S6
S5 12000 11200 11600
S4 11200 10500 10900
S6 11600 10900 11100
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.998 0.998 1.000
S4 0.998 0.998 1.000
S6 1.000 1.000 0.993

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
18S_rDNA 18S_rDNA 889 0.251
25S_rDNA 25S_rDNA 1392 0.393
5.8S_rDNA 5.8S_rDNA 91 0.026

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1 3 0.000892
23300 2 0.0444
15 1 0.000988
19 1 0.000644
21 1 0.000437
30 1 0.000603
32 1 0.000734
49 1 0.000851
60 1 0.00322
61 1 0.00081
66 1 0.00156
80 1 0.00439
85 1 0.0031
89 1 0.00292
103 1 0.0013
7230 1 0.0217
11400 1 0.022
33200 1 0.0222