Cluster no. 85

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Cluster is part of supercluster: 29

Cluster characteristics:

size 3894
size_real 3894
ecount 67336
supercluster 29
annotations_summary 15.02% Class_I/LINE:LINE-RT
8.14% Class_I/LINE:LINE-ENDO
0.05% organelle/mitochondria
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.05% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-PROT
pair_completeness 0.749326145552561
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000770416024653313
satellite_probability 6.84243327814155e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1340
S4 1250
S6 1310
comparative analysis - number of edges between species:
S5 S4 S6
S5 8320 7210 8010
S4 7210 6650 7050
S6 8010 7050 7810
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.986 1.000
S4 0.986 1.020 0.993
S6 1.000 0.993 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 2 0.00051
LINE LINE-ENDO LINE LINE-ENDO 317 0.08141
LINE LINE-RT LINE LINE-RT 585 0.15023
Ale Ty1-INT Ale Ty1-INT 2 0.00051
Reina Ty3-GAG Reina Ty3-GAG 1 0.00026
CRM Ty3-INT CRM Ty3-INT 1 0.00026
Reina Ty3-INT Reina Ty3-INT 1 0.00026
TatIV_Ogre Ty3-PROT TatIV_Ogre Ty3-PROT 1 0.00026
CRM Ty3-RT CRM Ty3-RT 1 0.00026
hAT hAT-TPase hAT hAT-TPase 2 0.00051

clusters with similarity:

Cluster Number of similarity hits
3 1
24 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1 7 0.00194
2 7 0.00208
5 5 0.00201
13 5 0.0029
16 4 0.00298
19 4 0.00224
20 4 0.00208
36 4 0.00299
2940 4 0.0142
3480 4 0.0142
15 3 0.00241
32 3 0.00188
33 3 0.00272
59 3 0.00251
63 3 0.00211
107 3 0.00621
136 3 0.00712
8320 3 0.0107
4 2 0.000582
6 2 0.000523
7 2 0.000824
10 2 0.000798
17 2 0.00113
35 2 0.00152
45 2 0.00155
50 2 0.00171
54 2 0.00156
56 2 0.0014
66 2 0.00229
69 2 0.00212
84 2 0.00204
99 2 0.00212
119 2 0.00275
140 2 0.00414
147 2 0.00378
8830 2 0.00713
10400 2 0.00713
19600 2 0.00714
24400 2 0.00714
26200 2 0.00714
26800 2 0.00714
28200 2 0.00714
29400 2 0.00714
37400 2 0.00714
12 1 0.000331
14 1 0.000697
18 1 0.000667
21 1 0.000396
22 1 0.000922
24 1 0.000717
34 1 0.00137
38 1 0.00125
41 1 0.000732
44 1 0.00124
47 1 0.000935
52 1 0.000909
55 1 0.00077
58 1 0.000681
61 1 0.000681
62 1 0.00128
65 1 0.00114
68 1 0.000709
83 1 0.000729
90 1 0.0013
91 1 0.0031
94 1 0.000921
101 1 0.0014
103 1 0.000996
109 1 0.00113
110 1 0.00103
111 1 0.00187
117 1 0.0013
120 1 0.00156
121 1 0.00149
125 1 0.00171
130 1 0.00167
137 1 0.00155
142 1 0.00154
143 1 0.00214
146 1 0.0033
150 1 0.00186
151 1 0.00258
162 1 0.00343
166 1 0.00298
168 1 0.00241
175 1 0.00283
245 1 0.0034
311 1 0.00328
549 1 0.00348
653 1 0.00355
665 1 0.00355
684 1 0.00347
761 1 0.00351
1240 1 0.00355
1250 1 0.00352
2310 1 0.00355
2920 1 0.00356
3200 1 0.00355
3670 1 0.00355
4390 1 0.00357
5280 1 0.00356
7880 1 0.00357
7950 1 0.00358
13500 1 0.00357
17500 1 0.00357
19200 1 0.00357
25700 1 0.00357
27700 1 0.00357
27800 1 0.00357
34500 1 0.00357
34600 1 0.00357
34900 1 0.00357
38100 1 0.00357
38500 1 0.00357
40300 1 0.00357
41600 1 0.00357
46700 1 0.00357
47300 1 0.00357