Cluster no. 82

Cluster no. 82

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Cluster is part of supercluster: 3

Cluster characteristics:

size	4043
size_real	4043
ecount	342505
supercluster	3
annotations_summary	0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.02% Class_I/LTR/Ty1_copia/Bianca:Ty1-RT
pair_completeness	0.490781710914454
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.299530051941628
satellite_probability	2.52368240178252e-09
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1450
S4	1310
S6	1290

comparative analysis - number of edges between species:

	S5	S4	S6
S5	43700	40900	38000
S4	40900	37800	35300
S6	38000	35300	32600

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.996	1.000	1.000
S4	1.000	0.996	1.000
S6	1.000	1.000	0.995

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Bianca Ty1-RT Bianca Ty1-RT 1 0.00025

CRM Ty3-INT CRM Ty3-INT 1 0.00025

clusters with similarity:

Cluster	Number of similarity hits

8	3160
43	2650
112	2060
36	11

clusters connected through mates:

Cluster	Number of shared read pairs	k

43	610	0.398
8	362	0.133
112	302	0.231
17	7	0.00321
32	4	0.00199
49	3	0.00165
9	2	0.0011
46	2	0.00105
9040	2	0.00289
10200	2	0.00289
2	1	0.000264
5	1	0.000344
10	1	0.000343
13	1	0.000469
23	1	0.00033
34	1	0.000876
36	1	0.000572
38	1	0.000825
39	1	0.000697
54	1	0.00059
55	1	0.000585
56	1	0.000545
59	1	0.000622
61	1	0.000532
68	1	0.000549
80	1	0.00114
103	1	0.000706
107	1	0.00112
109	1	0.000772
111	1	0.00106
137	1	0.000945
154	1	0.00141
304	1	0.00142
6630	1	0.00144
14100	1	0.00145
26600	1	0.00145

CL82 ----> CL43

No. of shared pairs: :610

CL82 ----> CL8

No. of shared pairs: :362

CL82 ----> CL112

No. of shared pairs: :302