Cluster no. 80

Cluster no. 80

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Cluster is part of supercluster: 26

Cluster characteristics:

size	4102
size_real	4102
ecount	54828
supercluster	26
annotations_summary	18.31% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.02% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness	0.835346756152125
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00146270112140419
satellite_probability	1.1655040537334e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1400
S4	1380
S6	1330

comparative analysis - number of edges between species:

	S5	S4	S6
S5	6660	6180	6200
S4	6180	5890	5880
S6	6200	5880	5760

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.010	0.991	1.000
S4	0.991	1.000	1.010
S6	1.000	1.010	0.992

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 751 0.18308

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.00024

Reina Ty3-GAG Reina Ty3-GAG 1 0.00024

Tekay Ty3-INT Tekay Ty3-INT 1 0.00024

Athila Ty3-RT Athila Ty3-RT 1 0.00024

clusters with similarity:

Cluster	Number of similarity hits

33

1

clusters connected through mates:

Cluster	Number of shared read pairs	k

469	15	0.0758
244	10	0.0472
2	4	0.00122
269	4	0.0199
1880	4	0.0212
3350	4	0.0214
1	3	0.000856
5	3	0.00125
22	3	0.00303
30	3	0.00167
33	3	0.00298
66	3	0.00385
10600	3	0.0162
11200	3	0.0162
4	2	0.000598
7	2	0.000858
10	2	0.000829
14	2	0.00149
26	2	0.000899
56	2	0.0015
58	2	0.00146
63	2	0.00151
73	2	0.00187
95	2	0.00545
137	2	0.00363
3300	2	0.0107
4340	2	0.0107
4990	2	0.0108
5050	2	0.0108
6700	2	0.0108
8730	2	0.0108
13500	2	0.0108
22500	2	0.0108
35100	2	0.0108
38600	2	0.0108
48000	2	0.0108
11	1	0.000432
12	1	0.000341
15	1	0.000868
24	1	0.00077
25	1	0.00125
27	1	0.000924
29	1	0.000419
34	1	0.00158
41	1	0.000786
45	1	0.000838
49	1	0.00076
52	1	0.000995
55	1	0.000831
59	1	0.000909
61	1	0.000728
62	1	0.00146
67	1	0.00166
69	1	0.00118
82	1	0.00114
84	1	0.00113
91	1	0.00439
92	1	0.0026
102	1	0.00137
110	1	0.00114
115	1	0.00142
120	1	0.00183
123	1	0.00323
129	1	0.00216
132	1	0.00297
134	1	0.00224
138	1	0.00227
144	1	0.00387
168	1	0.00313
170	1	0.00367
211	1	0.00471
218	1	0.00404
243	1	0.005
391	1	0.00495
552	1	0.00518
1040	1	0.00528
1630	1	0.00532
3060	1	0.00535
4630	1	0.00536
8620	1	0.00539
9950	1	0.00539
10800	1	0.00542
12100	1	0.00542
12900	1	0.00539
13600	1	0.00542
20000	1	0.00541
20500	1	0.00541
25600	1	0.00541
26400	1	0.00541
26800	1	0.00541
28600	1	0.00541

CL80 ----> CL469

No. of shared pairs: :15

CL80 ----> CL244

No. of shared pairs: :10