Cluster no. 78

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Cluster is part of supercluster: 6

Cluster characteristics:

size	4258
size_real	4258
ecount	402692
supercluster	6
annotations_summary	0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 0.02% Class_I/LINE:LINE-ENDO 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
pair_completeness	0.582899628252788
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00211366838891498
satellite_probability	1.00051650786948e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1420
S4	1430
S6	1420

comparative analysis - number of edges between species:

	S5	S4	S6
S5	44700	44500	44300
S4	44500	44800	45200
S6	44300	45200	45100

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.010	0.998	0.993
S4	0.998	0.997	1.000
S6	0.993	1.000	1.000

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-ENDO LINE LINE-ENDO 1 0.00023

Ivana Ty1-PROT Ivana Ty1-PROT 1 0.00023

CRM Ty3-RT CRM Ty3-RT 1 0.00023

Tekay Ty3-RT Tekay Ty3-RT 1 0.00023

clusters with similarity:

Cluster	Number of similarity hits

52	16100
59	4740
125	1760
219	4

clusters connected through mates:

Cluster	Number of shared read pairs	k

59	448	0.303
52	415	0.3
125	115	0.133
1	4	0.00103
2	2	0.000548
10	2	0.000717
30	2	0.000919
56	2	0.00117
84	2	0.00158
168	2	0.00287
7480	2	0.00356
46400	2	0.00356
3	1	0.000363
4	1	0.000269
5	1	0.00036
9	1	0.00059
12	1	0.000302
15	1	0.000654
16	1	0.000616
17	1	0.000488
19	1	0.000483
33	1	0.000722
37	1	0.000653
45	1	0.000637
49	1	0.000591
57	1	0.000596
61	1	0.000571
62	1	0.000941
66	1	0.000864
72	1	0.000644
90	1	0.000954
92	1	0.00131
93	1	0.000927
94	1	0.000731
101	1	0.00101
103	1	0.000778
110	1	0.000798
111	1	0.00122
121	1	0.00105
194	1	0.00168
3100	1	0.00178
11900	1	0.00178
13100	1	0.00178
23100	1	0.00178
29300	1	0.00178
29900	1	0.00178

CL78 ----> CL59

No. of shared pairs: :448

CL78 ----> CL52

No. of shared pairs: :415

CL78 ----> CL125

No. of shared pairs: :115