Cluster no. 76

Cluster no. 76

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Cluster is part of supercluster: 9

Cluster characteristics:

size	4379
size_real	4379
ecount	142385
supercluster	9
annotations_summary	0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 0.02% organelle/plastid
pair_completeness	0.633345766505035
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00159853847910482
satellite_probability	4.97759293480724e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1460
S4	1480
S6	1440

comparative analysis - number of edges between species:

	S5	S4	S6
S5	14600	15700	15300
S4	15700	16800	16400
S6	15300	16400	16200

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	1.000	0.998
S4	1.000	0.999	0.999
S6	0.998	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00023

SIRE Ty1-PROT SIRE Ty1-PROT 1 0.00023

clusters with similarity:

Cluster	Number of similarity hits

65	217
113	181
20	25
41	23
72	2
114	2
15	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

113	241	0.26
65	147	0.135
114	81	0.105
20	75	0.0351
41	30	0.019
13	5	0.00259
10	4	0.00147
2160	4	0.00807
2960	4	0.00809
4140	4	0.0081
3	3	0.00112
7	3	0.00114
35	3	0.00196
61	3	0.00178
72	3	0.00202
103	3	0.00247
15	2	0.00137
19	2	0.001
40	2	0.00149
613	2	0.00402
4480	2	0.00406
4530	2	0.00405
4610	2	0.00405
5640	2	0.00405
6370	2	0.00405
7320	2	0.00406
12700	2	0.00406
13500	2	0.00406
27800	2	0.00406
29400	2	0.00406
30100	2	0.00406
1	1	0.000262
14	1	0.000607
24	1	0.000622
28	1	0.000467
31	1	0.000608
46	1	0.000585
53	1	0.000956
54	1	0.000668
58	1	0.000595
59	1	0.00071
63	1	0.000613
69	1	0.000865
84	1	0.000838
94	1	0.00077
111	1	0.00134
112	1	0.000902
127	1	0.00152
144	1	0.00177
149	1	0.00156
150	1	0.00133
185	1	0.0018
311	1	0.00193
665	1	0.00202
724	1	0.002
1940	1	0.00202
1950	1	0.00202
2040	1	0.00202
2310	1	0.00202
2550	1	0.00202
2590	1	0.00202
4470	1	0.00203
5450	1	0.00203
6180	1	0.00203
6520	1	0.00203
9820	1	0.00203
10300	1	0.00203
10800	1	0.00203
11500	1	0.00203
11700	1	0.00203
12000	1	0.00203
12700	1	0.00203
13000	1	0.00203
16200	1	0.00203
19900	1	0.00203
20100	1	0.00203
21500	1	0.00203
27300	1	0.00203
28200	1	0.00203
28700	1	0.00203
30400	1	0.00203
35900	1	0.00203
37000	1	0.00203
37600	1	0.00203
38900	1	0.00203
39800	1	0.00203
41800	1	0.00203

CL76 ----> CL113

No. of shared pairs: :241

CL76 ----> CL65

No. of shared pairs: :147

CL76 ----> CL114

No. of shared pairs: :81

CL76 ----> CL20

No. of shared pairs: :75

CL76 ----> CL41

No. of shared pairs: :30