Cluster no. 74

Cluster no. 74

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Cluster is part of supercluster: 4

Cluster characteristics:

size	4380
size_real	4380
ecount	85260
supercluster	4
annotations_summary	0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-RH 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness	0.772561715904492
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.137442922374429
satellite_probability	4.83073159920017e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1440
S4	1500
S6	1440

comparative analysis - number of edges between species:

	S5	S4	S6
S5	9520	9600	9120
S4	9600	10200	9550
S6	9120	9550	8970

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.020	0.987	0.996
S4	0.987	1.010	1.000
S6	0.996	1.000	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-INT Ale Ty1-INT 1 0.00023

Ale Ty1-RH Ale Ty1-RH 2 0.00046

Reina Ty3-INT Reina Ty3-INT 1 0.00023

TatV Ty3-INT TatV Ty3-INT 1 0.00023

Reina Ty3-RT Reina Ty3-RT 1 0.00023

hAT hAT-TPase hAT hAT-TPase 1 0.00023

clusters with similarity:

Cluster	Number of similarity hits

53	101
38	9
75	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

53	149	0.178
38	93	0.116
1420	7	0.0245
25	5	0.00559
4190	4	0.0141
22	3	0.00276
3270	3	0.0106
4130	3	0.0106
8550	3	0.0106
10300	3	0.0106
12400	3	0.0106
13000	3	0.0106
10	2	0.000797
30	2	0.00105
56	2	0.0014
75	2	0.00253
84	2	0.00203
142	2	0.00307
3710	2	0.00705
17900	2	0.00709
18000	2	0.00709
20000	2	0.00709
26800	2	0.00709
27800	2	0.00709
32100	2	0.00709
32500	2	0.00709
33900	2	0.00709
35400	2	0.00709
36600	2	0.00709
39500	2	0.00709
40400	2	0.00709
43800	2	0.00709
44400	2	0.00709
1	1	0.000278
6	1	0.000262
7	1	0.000412
16	1	0.000744
19	1	0.000559
39	1	0.000976
40	1	0.000882
49	1	0.000708
50	1	0.000854
51	1	0.000765
58	1	0.00068
60	1	0.00182
62	1	0.00128
86	1	0.00113
89	1	0.00173
90	1	0.0013
103	1	0.000994
120	1	0.00155
136	1	0.00236
530	1	0.00344
1260	1	0.0035
3450	1	0.00353
5560	1	0.00353
5640	1	0.00353
7200	1	0.00355
10000	1	0.00354
11800	1	0.00354
15900	1	0.00355
17900	1	0.00355
18800	1	0.00355
20600	1	0.00355
20900	1	0.00355
22600	1	0.00355
36800	1	0.00355
38300	1	0.00355

CL74 ----> CL53

No. of shared pairs: :149

CL74 ----> CL38

No. of shared pairs: :93