Cluster no. 73

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Cluster is part of supercluster: 15

Cluster characteristics:

size 4424
size_real 4424
ecount 29110
supercluster 15
annotations_summary 0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness 0.428940568475452
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000226039783001808
satellite_probability 5.12148319141113e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1530
S4 1450
S6 1450
comparative analysis - number of edges between species:
S5 S4 S6
S5 3390 3270 3140
S4 3270 3380 3180
S6 3140 3180 3150
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.030 0.988 0.985
S4 0.988 1.020 0.994
S6 0.985 0.994 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-INT SIRE Ty1-INT 1 0.00023
Tekay Ty3-RH Tekay Ty3-RH 1 0.00023

clusters with similarity:

Cluster Number of similarity hits
42 19
39 4

clusters connected through mates:

Cluster Number of shared
read pairs
k
42 188 0.104
39 103 0.0633
409 10 0.0111
30 7 0.0028
35 7 0.00364
255 7 0.00766
369 7 0.00777
1410 7 0.00787
94 6 0.00355
1030 6 0.00674
1 5 0.00119
844 5 0.00561
896 5 0.00561
15 4 0.00216
45 4 0.00211
58 4 0.00193
539 4 0.00449
2450 4 0.00451
2490 4 0.00451
3330 4 0.00451
2 3 0.000755
5 3 0.000969
10 3 0.000964
16 3 0.00154
19 3 0.00125
27 3 0.00168
41 3 0.00152
943 3 0.00337
2550 3 0.00338
2860 3 0.00339
6030 3 0.00339
6180 3 0.00339
6880 3 0.00339
11100 3 0.00339
7 2 0.00066
9 2 0.000991
11 2 0.000664
13 2 0.00086
33 2 0.00117
57 2 0.000999
59 2 0.00111
75 2 0.00143
80 2 0.00187
83 2 0.00101
84 2 0.00126
87 2 0.00136
93 2 0.00143
113 2 0.00152
147 2 0.00176
168 2 0.00196
1370 2 0.00225
1450 2 0.00225
1970 2 0.00225
2360 2 0.00226
2720 2 0.00226
3950 2 0.00226
4850 2 0.00226
6600 2 0.00226
8860 2 0.00226
9560 2 0.00226
11700 2 0.00226
12700 2 0.00226
13000 2 0.00226
13500 2 0.00226
17400 2 0.00226
19800 2 0.00226
20800 2 0.00226
20900 2 0.00226
21100 2 0.00226
23100 2 0.00226
24200 2 0.00226
24600 2 0.00226
24800 2 0.00226
24900 2 0.00226
25800 2 0.00226
36000 2 0.00226
39900 2 0.00226
40600 2 0.00226
42900 2 0.00226
46100 2 0.00226
47200 2 0.00226
4 1 0.000247
6 1 0.000226
8 1 0.000344
12 1 0.000275
17 1 0.000421
18 1 0.000475
20 1 0.000396
23 1 0.00031
32 1 0.000454
34 1 0.000749
40 1 0.000576
49 1 0.000496
50 1 0.000564
51 1 0.000524
52 1 0.000586
54 1 0.000529
56 1 0.000493
62 1 0.000722
65 1 0.000676
67 1 0.000768
68 1 0.000496
72 1 0.000533
86 1 0.000673
90 1 0.000729
98 1 0.000611
100 1 0.000857
107 1 0.000919
117 1 0.000726
130 1 0.000832
136 1 0.000974
144 1 0.00104
153 1 0.000973
169 1 0.0011
185 1 0.00106
211 1 0.0011
258 1 0.0011
260 1 0.00109
744 1 0.00112
780 1 0.00112
900 1 0.00112
960 1 0.00112
1200 1 0.00113
1700 1 0.00112
2330 1 0.00113
3420 1 0.00113
3570 1 0.00113
3610 1 0.00113
3690 1 0.00113
3920 1 0.00113
3920 1 0.00113
4010 1 0.00113
4170 1 0.00113
4810 1 0.00113
5530 1 0.00113
5580 1 0.00113
5580 1 0.00113
5920 1 0.00113
6990 1 0.00113
7220 1 0.00113
7360 1 0.00113
7700 1 0.00113
8150 1 0.00113
8370 1 0.00113
9100 1 0.00113
9370 1 0.00113
10100 1 0.00113
11200 1 0.00113
11900 1 0.00113
12700 1 0.00113
12700 1 0.00113
13000 1 0.00113
13200 1 0.00113
13600 1 0.00113
14200 1 0.00113
15100 1 0.00113
16100 1 0.00113
16900 1 0.00113
16900 1 0.00113
17500 1 0.00113
18200 1 0.00113
19100 1 0.00113
20800 1 0.00113
21100 1 0.00113
21500 1 0.00113
21900 1 0.00113
22400 1 0.00113
22400 1 0.00113
24100 1 0.00113
25300 1 0.00113
25400 1 0.00113
25600 1 0.00113
25800 1 0.00113
25800 1 0.00113
26000 1 0.00113
26200 1 0.00113
26600 1 0.00113
26900 1 0.00113
26900 1 0.00113
29300 1 0.00113
29400 1 0.00113
29400 1 0.00113
29800 1 0.00113
31400 1 0.00113
31500 1 0.00113
31600 1 0.00113
32200 1 0.00113
32800 1 0.00113
33200 1 0.00113
33600 1 0.00113
34000 1 0.00113
34700 1 0.00113
35200 1 0.00113
36300 1 0.00113
38000 1 0.00113
38500 1 0.00113
39100 1 0.00113
39100 1 0.00113
40000 1 0.00113
41500 1 0.00113
41600 1 0.00113
41700 1 0.00113
41900 1 0.00113
43200 1 0.00113
44300 1 0.00113
44900 1 0.00113
46400 1 0.00113
46600 1 0.00113
47700 1 0.00113
47900 1 0.00113

CL73 ----> CL42

image

No. of shared pairs: :188

CL73 ----> CL39

image

No. of shared pairs: :103

CL73 ----> CL409

image

No. of shared pairs: :10