Cluster no. 71

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Cluster is part of supercluster: 24

Cluster characteristics:

size 4661
size_real 4661
ecount 131023
supercluster 24
annotations_summary 0.06% organelle/plastid
pair_completeness 0.523700555737169
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00193091611242223
satellite_probability 2.0897667525813e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1520
S4 1560
S6 1580
comparative analysis - number of edges between species:
S5 S4 S6
S5 14600 14500 14400
S4 14500 14800 14700
S6 14400 14700 14500
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.994 0.995
S4 0.994 1.000 1.000
S6 0.995 1.000 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 3 0.00064

clusters with similarity:

Cluster Number of similarity hits
21 3300
23 1340
4 911
31 751
64 538
5 357
14 189
46 173
29 172
55 136
109 19
108 11
153 11
129 9
59 1
63 1
68 1
134 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4 217 0.0558
21 160 0.0538
46 139 0.0714
23 101 0.0329
55 73 0.0418
14 65 0.0345
64 59 0.0331
29 35 0.0119
31 34 0.0181
109 21 0.0158
6 8 0.00187
5 6 0.00204
10 6 0.00203
30 6 0.00256
1 5 0.00123
50 5 0.00309
153 5 0.00573
27 4 0.00246
108 4 0.00272
1090 4 0.00545
7 3 0.00104
13 3 0.00138
99 3 0.00215
140 3 0.00322
149 3 0.00341
773 3 0.00408
997 3 0.00409
3650 3 0.00411
5610 3 0.00411
10800 3 0.00411
38 2 0.0016
42 2 0.00122
49 2 0.00108
59 2 0.00122
63 2 0.00107
194 2 0.00262
794 2 0.00273
947 2 0.00272
1590 2 0.00273
2840 2 0.00273
2950 2 0.00273
3360 2 0.00274
3510 2 0.00274
4070 2 0.00274
6740 2 0.00274
7990 2 0.00274
24900 2 0.00274
38900 2 0.00274
40500 2 0.00274
43700 2 0.00274
2 1 0.000262
3 1 0.000343
15 1 0.000589
17 1 0.000451
18 1 0.000513
19 1 0.000447
22 1 0.000652
26 1 0.000361
32 1 0.000488
41 1 0.000551
48 1 0.00067
51 1 0.00057
56 1 0.000534
61 1 0.000521
62 1 0.000813
68 1 0.000538
69 1 0.000718
81 1 0.000596
83 1 0.000549
84 1 0.000699
103 1 0.000688
115 1 0.000801
118 1 0.00131
119 1 0.000849
127 1 0.00112
129 1 0.000992
132 1 0.00113
134 1 0.00101
136 1 0.00115
150 1 0.00101
168 1 0.00116
193 1 0.00128
200 1 0.00133
214 1 0.00125
218 1 0.00126
244 1 0.00132
509 1 0.00135
707 1 0.00136
803 1 0.00136
1430 1 0.00137
1650 1 0.00137
2030 1 0.00137
2060 1 0.00137
2610 1 0.00137
2640 1 0.00137
3240 1 0.00137
3340 1 0.00137
3540 1 0.00137
3790 1 0.00137
4450 1 0.00137
5270 1 0.00137
5570 1 0.00137
5600 1 0.00137
6500 1 0.00137
6690 1 0.00137
7230 1 0.00137
8020 1 0.00137
8240 1 0.00137
8900 1 0.00137
9580 1 0.00137
9910 1 0.00137
10900 1 0.00137
11000 1 0.00137
11000 1 0.00137
11200 1 0.00137
11300 1 0.00137
11800 1 0.00137
12400 1 0.00137
12400 1 0.00137
12700 1 0.00137
12700 1 0.00137
12900 1 0.00137
13000 1 0.00137
13500 1 0.00137
13800 1 0.00137
14900 1 0.00137
17900 1 0.00137
18300 1 0.00137
19200 1 0.00137
21600 1 0.00137
22800 1 0.00137
24200 1 0.00137
25300 1 0.00137
26800 1 0.00137
29700 1 0.00137
31600 1 0.00137
32700 1 0.00137
35200 1 0.00137
35400 1 0.00137
35600 1 0.00137
36800 1 0.00137
44300 1 0.00137
45300 1 0.00137
46800 1 0.00137
47500 1 0.00137
47700 1 0.00137
47900 1 0.00137

CL71 ----> CL4

image

No. of shared pairs: :217

CL71 ----> CL21

image

No. of shared pairs: :160

CL71 ----> CL46

image

No. of shared pairs: :139

CL71 ----> CL23

image

No. of shared pairs: :101

CL71 ----> CL55

image

No. of shared pairs: :73

CL71 ----> CL14

image

No. of shared pairs: :65

CL71 ----> CL64

image

No. of shared pairs: :59

CL71 ----> CL29

image

No. of shared pairs: :35

CL71 ----> CL31

image

No. of shared pairs: :34

CL71 ----> CL109

image

No. of shared pairs: :21