Cluster no. 70

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Cluster is part of supercluster: 2

Cluster characteristics:

size	4717
size_real	4717
ecount	299718
supercluster	2
annotations_summary	31.74% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 13.00% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT 4.83% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.61% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 0.51% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT 0.49% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-PROT 0.21% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT 0.15% Class_I/pararetrovirus:PARA-PROT 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT 0.04% Class_I/pararetrovirus:PARA-RT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-GAG
pair_completeness	0.660915492957747
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000635997456010176
satellite_probability	3.15659983381055e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1610
S4	1520
S6	1590

comparative analysis - number of edges between species:

	S5	S4	S6
S5	34200	33600	33400
S4	33600	32800	32900
S6	33400	32900	32800

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	1.000	0.998
S4	1.000	0.997	1.000
S6	0.998	1.000	1.000

protein domains:

Reads annotation summary

cl_string domain Freq proportion

pararetrovirus PARA-PROT pararetrovirus PARA-PROT 7 0.00148

pararetrovirus PARA-RT pararetrovirus PARA-RT 2 0.00042

Ale Ty1-INT Ale Ty1-INT 1 0.00021

Tcn1 Ty3-GAG Tcn1 Ty3-GAG 1 0.00021

Chlamyvir Ty3-PROT Chlamyvir Ty3-PROT 23 0.00488

Reina Ty3-PROT Reina Ty3-PROT 10 0.00212

Tekay Ty3-PROT Tekay Ty3-PROT 613 0.12996

CRM Ty3-RT CRM Ty3-RT 29 0.00615

Chlamyvir Ty3-RT Chlamyvir Ty3-RT 24 0.00509

Galadriel Ty3-RT Galadriel Ty3-RT 7 0.00148

Reina Ty3-RT Reina Ty3-RT 228 0.04834

Selgy Ty3-RT Selgy Ty3-RT 1 0.00021

Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00021

Tekay Ty3-RT Tekay Ty3-RT 1497 0.31736

clusters with similarity:

Cluster	Number of similarity hits

97	4140
105	1720
165	25
181	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

97	395	0.425
105	337	0.366
165	16	0.0267
7	12	0.00457
181	11	0.0196
56	3	0.00184
101	3	0.00328
102	3	0.00291
5280	3	0.0062
3	2	0.000748
10	2	0.000738
23	2	0.000709
52	2	0.00153
63	2	0.00123
100	2	0.00261
7850	2	0.00414
8130	2	0.00414
20800	2	0.00415
4	1	0.000275
5	1	0.000371
6	1	0.000249
16	1	0.000647
18	1	0.000588
19	1	0.000503
26	1	0.000397
27	1	0.000725
32	1	0.000555
42	1	0.000716
58	1	0.000598
59	1	0.000715
61	1	0.000598
132	1	0.00158
1290	1	0.00206
8090	1	0.00207
17900	1	0.00207
19100	1	0.00207
28000	1	0.00207
39600	1	0.00207
47300	1	0.00207
47500	1	0.00207

CL70 ----> CL97

No. of shared pairs: :395

CL70 ----> CL105

No. of shared pairs: :337

CL70 ----> CL165

No. of shared pairs: :16

CL70 ----> CL7

No. of shared pairs: :12

CL70 ----> CL181

No. of shared pairs: :11