Cluster no. 69

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Cluster is part of supercluster: 23

Cluster characteristics:

size 4760
size_real 4760
ecount 23791
supercluster 23
annotations_summary 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
pair_completeness 0.563218390804598
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000210084033613445
satellite_probability 1.29477276776204e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1570
S4 1650
S6 1540
comparative analysis - number of edges between species:
S5 S4 S6
S5 2770 2750 2490
S4 2750 2930 2590
S6 2490 2590 2440
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.030 0.987 0.984
S4 0.987 1.020 0.991
S6 0.984 0.991 1.030

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tork Ty1-RT Tork Ty1-RT 1 0.00021
Tekay Ty3-INT Tekay Ty3-INT 1 0.00021

clusters with similarity:

Cluster Number of similarity hits
83 63
41 18

clusters connected through mates:

Cluster Number of shared
read pairs		 k
83 149 0.0848
41 123 0.0702
746 9 0.0134
1 8 0.00201
7 8 0.00284
1520 6 0.00897
84 4 0.00293
486 4 0.0059
871 4 0.00596
2140 4 0.00598
3340 4 0.00599
4370 4 0.00599
5070 4 0.006
5270 4 0.006
5 3 0.00104
10 3 0.00104
16 3 0.00174
30 3 0.00132
32 3 0.00151
42 3 0.0019
689 3 0.00446
1760 3 0.00449
3380 3 0.0045
4050 3 0.00449
4820 3 0.0045
7440 3 0.0045
7730 3 0.0045
8180 3 0.0045
10800 3 0.0045
13 2 0.000949
19 2 0.00092
52 2 0.00135
59 2 0.00126
72 2 0.00121
85 2 0.00212
87 2 0.00159
463 2 0.00298
786 2 0.00298
1040 2 0.00298
1520 2 0.00299
2740 2 0.003
4200 2 0.003
5360 2 0.003
6670 2 0.003
6820 2 0.003
7280 2 0.003
7630 2 0.003
8340 2 0.003
8380 2 0.003
8730 2 0.003
9540 2 0.003
9860 2 0.003
10400 2 0.003
11900 2 0.003
11900 2 0.003
12200 2 0.003
12500 2 0.003
12700 2 0.003
13200 2 0.003
15400 2 0.003
16000 2 0.003
17600 2 0.003
21400 2 0.003
22000 2 0.003
23100 2 0.003
24300 2 0.003
25200 2 0.003
25400 2 0.003
26300 2 0.003
28300 2 0.003
29700 2 0.003
30800 2 0.003
32900 2 0.003
35200 2 0.003
37700 2 0.003
38400 2 0.003
44800 2 0.003
47800 2 0.003
2 1 0.000266
8 1 0.000372
15 1 0.000612
17 1 0.000464
20 1 0.000433
24 1 0.000562
28 1 0.000432
33 1 0.000672
35 1 0.000588
40 1 0.000659
49 1 0.000557
53 1 0.00082
54 1 0.000599
56 1 0.000552
61 1 0.000539
62 1 0.000857
63 1 0.000554
71 1 0.000718
76 1 0.000865
77 1 0.00068
80 1 0.00118
89 1 0.00104
90 1 0.000868
96 1 0.000808
99 1 0.000752
127 1 0.0012
136 1 0.00124
142 1 0.000966
168 1 0.00125
337 1 0.00147
682 1 0.00148
741 1 0.00149
873 1 0.00148
890 1 0.00149
900 1 0.00149
927 1 0.00149
1430 1 0.00149
1440 1 0.00149
1520 1 0.00149
2230 1 0.00149
3580 1 0.0015
3770 1 0.0015
4280 1 0.0015
4930 1 0.0015
4940 1 0.0015
5120 1 0.0015
5730 1 0.0015
6040 1 0.0015
6330 1 0.0015
6670 1 0.0015
7050 1 0.0015
7840 1 0.0015
8670 1 0.0015
8900 1 0.0015
9670 1 0.0015
10100 1 0.0015
10200 1 0.0015
10700 1 0.0015
12100 1 0.0015
12500 1 0.0015
12700 1 0.0015
12800 1 0.0015
12900 1 0.0015
13200 1 0.0015
13600 1 0.0015
15400 1 0.0015
16900 1 0.0015
17400 1 0.0015
17700 1 0.0015
17900 1 0.0015
18300 1 0.0015
18600 1 0.0015
19500 1 0.0015
24500 1 0.0015
24900 1 0.0015
25200 1 0.0015
26200 1 0.0015
26200 1 0.0015
27000 1 0.0015
27200 1 0.0015
27600 1 0.0015
27700 1 0.0015
28100 1 0.0015
28400 1 0.0015
28500 1 0.0015
29600 1 0.0015
30100 1 0.0015
31200 1 0.0015
32000 1 0.0015
32300 1 0.0015
33600 1 0.0015
36600 1 0.0015
37400 1 0.0015
38100 1 0.0015
38700 1 0.0015
39400 1 0.0015
39500 1 0.0015
41100 1 0.0015
41200 1 0.0015
42200 1 0.0015
43500 1 0.0015
44700 1 0.0015
45300 1 0.0015
45800 1 0.0015
45800 1 0.0015
45900 1 0.0015
45900 1 0.0015
46000 1 0.0015
47300 1 0.0015

CL69 ----> CL83

image

No. of shared pairs: :149

CL69 ----> CL41

image

No. of shared pairs: :123