Cluster no. 66

Cluster no. 66

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Cluster is part of supercluster: 6

Cluster characteristics:

size	4938
size_real	4938
ecount	69304
supercluster	6
annotations_summary	0.04% Class_I/LINE:LINE-ENDO 0.02% Class_I/LINE:LINE-RT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
pair_completeness	0.611092985318108
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000607533414337789
satellite_probability	6.64175142550315e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1650
S4	1680
S6	1610

comparative analysis - number of edges between species:

	S5	S4	S6
S5	8310	8160	7490
S4	8160	8130	7390
S6	7490	7390	6780

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	0.997	1.000
S4	0.997	1.010	0.998
S6	1.000	0.998	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-ENDO LINE LINE-ENDO 2 0.00041

LINE LINE-RT LINE LINE-RT 1 0.00020

Ale Ty1-GAG Ale Ty1-GAG 1 0.00020

Ale Ty1-RT Ale Ty1-RT 1 0.00020

Reina Ty3-PROT Reina Ty3-PROT 1 0.00020

clusters with similarity:

Cluster	Number of similarity hits

103	267
52	205
114	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

103	414	0.313
52	365	0.257
114	10	0.0114
347	10	0.0164
290	6	0.0098
388	6	0.00981
1040	6	0.00999
1160	5	0.00833
5350	4	0.00669
1	3	0.000766
10	3	0.00106
49	3	0.00174
56	3	0.00172
80	3	0.00385
3560	3	0.00502
6690	3	0.00502
7260	3	0.00502
8160	3	0.00502
8170	3	0.00502
12100	3	0.00502
12700	3	0.00502
58	2	0.00112
85	2	0.00229
88	2	0.00224
142	2	0.00207
3400	2	0.00334
3700	2	0.00334
3880	2	0.00334
5060	2	0.00334
6760	2	0.00334
10200	2	0.00335
11300	2	0.00335
11700	2	0.00335
12700	2	0.00335
14000	2	0.00335
17100	2	0.00335
17700	2	0.00335
18100	2	0.00335
20100	2	0.00335
23500	2	0.00335
23800	2	0.00335
28600	2	0.00335
30700	2	0.00335
34200	2	0.00335
37800	2	0.00335
38900	2	0.00335
5	1	0.000356
13	1	0.000491
17	1	0.000479
19	1	0.000475
28	1	0.000445
32	1	0.000522
35	1	0.000613
38	1	0.000894
54	1	0.000624
55	1	0.000619
57	1	0.000583
61	1	0.00056
62	1	0.000911
63	1	0.000576
78	1	0.000864
79	1	0.00102
81	1	0.000648
91	1	0.00156
92	1	0.00125
94	1	0.000713
97	1	0.000957
107	1	0.00125
143	1	0.00128
156	1	0.00125
168	1	0.00137
171	1	0.00136
229	1	0.00159
285	1	0.00164
1140	1	0.00167
1700	1	0.00167
1990	1	0.00167
2520	1	0.00167
3270	1	0.00167
3370	1	0.00167
3690	1	0.00167
4080	1	0.00167
4500	1	0.00167
5780	1	0.00168
5810	1	0.00167
6990	1	0.00168
8300	1	0.00168
8760	1	0.00167
8910	1	0.00168
9110	1	0.00167
10600	1	0.00167
11000	1	0.00167
11600	1	0.00167
12000	1	0.00167
12400	1	0.00167
12800	1	0.00167
13300	1	0.00167
16300	1	0.00168
17700	1	0.00168
18600	1	0.00168
20700	1	0.00168
22200	1	0.00168
22800	1	0.00168
25000	1	0.00168
29500	1	0.00168
30700	1	0.00168
33300	1	0.00168
36300	1	0.00168
39000	1	0.00168
41200	1	0.00168
41900	1	0.00168
42100	1	0.00168

CL66 ----> CL103

No. of shared pairs: :414

CL66 ----> CL52

No. of shared pairs: :365

CL66 ----> CL114

No. of shared pairs: :10

CL66 ----> CL347

No. of shared pairs: :10