Cluster no. 65

Cluster no. 65

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Cluster is part of supercluster: 9

Cluster characteristics:

size	4957
size_real	4957
ecount	73871
supercluster	9
annotations_summary	0.10% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.02% organelle/plastid
pair_completeness	0.612556929082628
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000201734920314706
satellite_probability	6.64175142550315e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1670
S4	1610
S6	1680

comparative analysis - number of edges between species:

	S5	S4	S6
S5	8810	8240	8390
S4	8240	7930	7910
S6	8390	7910	8060

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.010	0.993	1.000
S4	0.993	1.010	0.996
S6	1.000	0.996	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 2e-04

CRM Ty3-INT CRM Ty3-INT 5 1e-03

Reina Ty3-INT Reina Ty3-INT 1 2e-04

Tekay Ty3-INT Tekay Ty3-INT 1 2e-04

Reina Ty3-RT Reina Ty3-RT 1 2e-04

clusters with similarity:

Cluster	Number of similarity hits

76	217
41	122
113	60
20	9
15	7
72	4
172	4
28	3
107	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

41	201	0.119
76	147	0.135
113	94	0.0912
28	90	0.0401
72	59	0.0372
15	57	0.0365
20	22	0.00982
172	11	0.0167
200	7	0.0113
10	6	0.00212
670	6	0.00995
107	4	0.005
3970	4	0.00669
6740	4	0.00669
1	3	0.000766
3090	3	0.00502
3190	3	0.00501
3500	3	0.00501
5080	3	0.00502
2	2	0.000542
13	2	0.000981
38	2	0.00179
49	2	0.00116
59	2	0.00132
61	2	0.00112
63	2	0.00115
142	2	0.00207
4320	2	0.00334
4460	2	0.00334
5450	2	0.00335
5700	2	0.00335
6370	2	0.00335
6760	2	0.00335
10100	2	0.00335
10200	2	0.00335
11100	2	0.00335
12800	2	0.00335
15800	2	0.00335
20900	2	0.00335
28200	2	0.00335
28600	2	0.00335
29300	2	0.00335
30400	2	0.00335
39800	2	0.00335
43300	2	0.00335
47700	2	0.00335
16	1	0.000603
17	1	0.00048
19	1	0.000475
22	1	0.000714
24	1	0.000585
30	1	0.000452
37	1	0.000638
47	1	0.000721
54	1	0.000625
58	1	0.00056
62	1	0.000912
73	1	0.000676
83	1	0.000592
84	1	0.00077
85	1	0.00114
88	1	0.00112
94	1	0.000713
95	1	0.00128
106	1	0.00124
111	1	0.00117
182	1	0.00142
208	1	0.00161
801	1	0.00167
951	1	0.00166
987	1	0.00166
1240	1	0.00167
1950	1	0.00167
2060	1	0.00167
3110	1	0.00167
4620	1	0.00167
5080	1	0.00167
6140	1	0.00168
6320	1	0.00167
7640	1	0.00168
7810	1	0.00168
8260	1	0.00168
8870	1	0.00168
9100	1	0.00168
9630	1	0.00168
9930	1	0.00168
10100	1	0.00168
11100	1	0.00168
11400	1	0.00168
11600	1	0.00168
12600	1	0.00168
13600	1	0.00168
13800	1	0.00168
15200	1	0.00168
15500	1	0.00168
17100	1	0.00168
17500	1	0.00168
17500	1	0.00168
19900	1	0.00168
21200	1	0.00168
26800	1	0.00168
27400	1	0.00168
27600	1	0.00168
28600	1	0.00168
29100	1	0.00168
29300	1	0.00168
29300	1	0.00168
29600	1	0.00168
31100	1	0.00168
32100	1	0.00168
32500	1	0.00168
33000	1	0.00168
33600	1	0.00168
34300	1	0.00168
34700	1	0.00168
35200	1	0.00168
35500	1	0.00168
38400	1	0.00168
42700	1	0.00168
42800	1	0.00168
45100	1	0.00168
46700	1	0.00168
46900	1	0.00168

CL65 ----> CL41

No. of shared pairs: :201

CL65 ----> CL76

No. of shared pairs: :147

CL65 ----> CL113

No. of shared pairs: :94

CL65 ----> CL28

No. of shared pairs: :90

CL65 ----> CL72

No. of shared pairs: :59

CL65 ----> CL15

No. of shared pairs: :57

CL65 ----> CL20

No. of shared pairs: :22

CL65 ----> CL172

No. of shared pairs: :11