Cluster no. 64

Cluster no. 64

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Cluster is part of supercluster: 1

Cluster characteristics:

size	4972
size_real	4972
ecount	441485
supercluster	1
annotations_summary	0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness	0.404519774011299
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.332864038616251
satellite_probability	9.98497046025191e-09
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1680
S4	1590
S6	1700

comparative analysis - number of edges between species:

	S5	S4	S6
S5	51100	48700	50700
S4	48700	46500	47900
S6	50700	47900	49400

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.996	0.999	1.010
S4	0.999	1.000	0.999
S6	1.010	0.999	0.996

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Athila Ty3-INT Athila Ty3-INT 1 2e-04

clusters with similarity:

Cluster	Number of similarity hits

31	22200
23	16100
29	1270
71	538
140	24
21	19
50	10
5	8
1	6
119	6
121	5
14	3
6	2
47	1
134	1
794	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

31	812	0.368
23	771	0.227
21	70	0.0212
71	59	0.0331
29	47	0.0144
50	41	0.0211
5	29	0.00888
55	28	0.0135
119	20	0.0133
140	9	0.00715
6	6	0.00131
32	5	0.00211
4	4	0.000949
150	4	0.00304
46	3	0.00132
129	3	0.00225
7	2	0.000625
8	2	0.00065
13	2	0.000801
14	2	0.000905
17	2	0.000786
20	2	0.000741
59	2	0.00101
61	2	0.000891
63	2	0.000912
109	2	0.00121
134	2	0.00152
555	2	0.00189
794	2	0.00189
877	2	0.00189
13300	2	0.00189
18700	2	0.0019
1	1	0.000229
2	1	0.000241
10	1	0.000305
16	1	0.000472
28	1	0.00037
30	1	0.000375
47	1	0.000542
49	1	0.000458
54	1	0.000486
58	1	0.000446
62	1	0.000643
98	1	0.000553
99	1	0.000582
111	1	0.000763
113	1	0.000672
115	1	0.000636
121	1	0.000692
127	1	0.000818
128	1	0.000826
132	1	0.000829
141	1	0.000883
155	1	0.000912
168	1	0.000841
173	1	0.000835
214	1	0.000887
218	1	0.000895
328	1	0.000935
606	1	0.000943
803	1	0.000943
1060	1	0.000943
1230	1	0.000948
1800	1	0.000946
2060	1	0.000945
2180	1	0.000945
3240	1	0.000947
9040	1	0.000947
11800	1	0.000947
12700	1	0.000947
23500	1	0.000948
26100	1	0.000948
35100	1	0.000948
43400	1	0.000948
44700	1	0.000948
46400	1	0.000948
46500	1	0.000948

CL64 ----> CL31

No. of shared pairs: :812

CL64 ----> CL23

No. of shared pairs: :771

CL64 ----> CL21

No. of shared pairs: :70

CL64 ----> CL71

No. of shared pairs: :59

CL64 ----> CL29

No. of shared pairs: :47

CL64 ----> CL50

No. of shared pairs: :41

CL64 ----> CL5

No. of shared pairs: :29

CL64 ----> CL55

No. of shared pairs: :28

CL64 ----> CL119

No. of shared pairs: :20