Cluster no. 61

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Cluster is part of supercluster: 1

Cluster characteristics:

size 5272
size_real 5272
ecount 676944
supercluster 1
annotations_summary 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.377940407736539
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00455235204855842
satellite_probability 7.55887620545779e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1740
S4 1750
S6 1780
comparative analysis - number of edges between species:
S5 S4 S6
S5 72500 75300 73800
S4 75300 77400 76600
S6 73800 76600 75300
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.999 1.000 0.998
S4 1.000 0.996 1.000
S6 0.998 1.000 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00019
TatV Ty3-GAG TatV Ty3-GAG 1 0.00019
Tekay Ty3-INT Tekay Ty3-INT 1 0.00019
TatV Ty3-RT TatV Ty3-RT 1 0.00019
Tekay Ty3-RT Tekay Ty3-RT 1 0.00019

clusters with similarity:

Cluster Number of similarity hits
1 30700
6 6180
2 4380
142 1200
19 1110
63 925
29 274
12 156
4 35
7 25
54 1
62 1
99 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
6 673 0.142
2 401 0.0937
1 251 0.0556
142 209 0.134
29 74 0.0218
12 54 0.0137
4 41 0.00943
31 33 0.0141
19 28 0.0104
7 18 0.00539
63 16 0.00687
48 15 0.00768
9 8 0.00344
15 7 0.00324
22 7 0.00351
57 7 0.00303
11 6 0.00181
25 6 0.00333
45 6 0.00273
5 5 0.00147
8 5 0.00156
10 5 0.00146
110 5 0.00266
16 4 0.00178
27 4 0.00192
32 4 0.00159
33 4 0.00199
40 4 0.00196
44 4 0.00233
72 4 0.00183
24 3 0.0013
28 3 0.00106
36 3 0.00133
41 3 0.00132
56 3 0.00128
60 3 0.00206
62 3 0.00177
76 3 0.00178
84 3 0.00159
87 3 0.00168
89 3 0.00202
13 2 0.00076
14 2 0.000853
23 2 0.000566
30 2 0.000713
34 2 0.00122
35 2 0.000898
37 2 0.000925
46 2 0.000831
47 2 0.00101
49 2 0.000862
64 2 0.000891
65 2 0.00112
75 2 0.00118
105 2 0.00123
106 2 0.00142
132 2 0.00149
7160 2 0.00168
44300 2 0.00168
17 1 0.000373
18 1 0.000415
20 1 0.000353
21 1 0.000291
26 1 0.00031
38 1 0.000584
39 1 0.000517
42 1 0.000475
43 1 0.000492
50 1 0.000481
51 1 0.000451
52 1 0.000497
53 1 0.000573
54 1 0.000455
55 1 0.000452
59 1 0.000475
66 1 0.00056
67 1 0.000622
69 1 0.000539
70 1 0.000598
71 1 0.000521
78 1 0.000571
80 1 0.000728
82 1 0.000532
83 1 0.000438
85 1 0.000681
86 1 0.000558
90 1 0.000596
91 1 0.00081
94 1 0.000501
95 1 0.000728
97 1 0.00061
98 1 0.000515
100 1 0.000679
107 1 0.000717
113 1 0.000615
115 1 0.000585
117 1 0.000594
122 1 0.000632
127 1 0.000736
129 1 0.000681
138 1 0.000692
144 1 0.000791
147 1 0.000695
153 1 0.00075
171 1 0.000753
181 1 0.000788
209 1 0.000799
210 1 0.000813
302 1 0.000835
381 1 0.000831
436 1 0.000836
444 1 0.000835
537 1 0.000832
549 1 0.000835
585 1 0.000836
639 1 0.000833
1010 1 0.000836
1120 1 0.000837
1710 1 0.000837
2060 1 0.000838
3180 1 0.000839
3910 1 0.000839
4740 1 0.000839
5910 1 0.00084
5930 1 0.000839
5960 1 0.000839
10800 1 0.00084
11100 1 0.000839
11500 1 0.00084
13000 1 0.000839
13400 1 0.000839
13400 1 0.000839
13500 1 0.00084
17600 1 0.00084
18700 1 0.00084
20700 1 0.00084
22800 1 0.00084
24100 1 0.00084
27500 1 0.00084
33300 1 0.00084
34800 1 0.00084
37100 1 0.00084
39100 1 0.00084
39900 1 0.00084
40100 1 0.00084
41300 1 0.00084
41500 1 0.00084
44700 1 0.00084
47400 1 0.00084

CL61 ----> CL6

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No. of shared pairs: :673

CL61 ----> CL2

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No. of shared pairs: :401

CL61 ----> CL1

image

No. of shared pairs: :251

CL61 ----> CL142

image

No. of shared pairs: :209

CL61 ----> CL29

image

No. of shared pairs: :74

CL61 ----> CL12

image

No. of shared pairs: :54

CL61 ----> CL4

image

No. of shared pairs: :41

CL61 ----> CL31

image

No. of shared pairs: :33

CL61 ----> CL19

image

No. of shared pairs: :28

CL61 ----> CL7

image

No. of shared pairs: :18

CL61 ----> CL63

image

No. of shared pairs: :16

CL61 ----> CL48

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No. of shared pairs: :15