Cluster no. 59

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Cluster is part of supercluster: 6

Cluster characteristics:

size 5565
size_real 5565
ecount 726849
supercluster 6
annotations_summary 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
pair_completeness 0.504460665044607
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00467205750224618
satellite_probability 2.60623974767306e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1890
S4 1900
S6 1780
comparative analysis - number of edges between species:
S5 S4 S6
S5 84400 86000 77200
S4 86000 87600 78700
S6 77200 78700 71200
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 1.000 0.998
S4 1.000 1.000 0.998
S6 0.998 0.998 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ikeros Ty1-RT Ikeros Ty1-RT 1 0.00018
Reina Ty3-INT Reina Ty3-INT 1 0.00018
TatV Ty3-INT TatV Ty3-INT 1 0.00018
CRM Ty3-RH CRM Ty3-RH 1 0.00018
Tekay Ty3-RH Tekay Ty3-RH 1 0.00018
Tekay Ty3-RT Tekay Ty3-RT 1 0.00018

clusters with similarity:

Cluster Number of similarity hits
78 4740
125 1160
89 813
92 118
41 75
219 11
72 10
221 7
211 5
1 1
4 1
21 1
43 1
71 1
445 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
78 448 0.303
125 159 0.13
89 152 0.125
92 69 0.0617
219 31 0.0318
41 29 0.0145
221 17 0.0179
211 15 0.0159
72 11 0.00577
10 9 0.00286
9 8 0.0039
33 8 0.0046
356 7 0.00746
25 6 0.00392
45 6 0.00311
1 5 0.00118
3 5 0.00161
7 5 0.00163
39 5 0.00301
40 5 0.00283
53 5 0.0034
4 4 0.000981
20 4 0.00156
58 4 0.0019
130 4 0.00324
445 4 0.0043
1440 4 0.00434
6 3 0.000673
18 3 0.0014
19 3 0.00124
29 3 0.000962
35 3 0.00154
42 3 0.00164
54 3 0.00156
75 3 0.0021
85 3 0.00251
87 3 0.00199
4000 3 0.00326
2 2 0.000499
5 2 0.000639
8 2 0.000681
11 2 0.000657
15 2 0.00106
21 2 0.000633
22 2 0.00116
23 2 0.000614
27 2 0.0011
28 2 0.000779
30 2 0.00079
34 2 0.00146
37 2 0.00106
44 2 0.00139
49 2 0.000977
51 2 0.00103
56 2 0.00097
64 2 0.00101
65 2 0.00132
67 2 0.0015
69 2 0.00126
71 2 0.00122
73 2 0.00111
81 2 0.00107
83 2 0.000996
107 2 0.00178
110 2 0.00124
113 2 0.00148
138 2 0.00171
141 2 0.00201
143 2 0.00181
149 2 0.00187
218 2 0.00204
1190 2 0.00217
8990 2 0.00218
12 1 0.000273
13 1 0.000424
16 1 0.000505
26 1 0.000338
32 1 0.000447
36 1 0.000506
38 1 0.000695
43 1 0.000568
46 1 0.000468
47 1 0.000586
52 1 0.000575
61 1 0.000475
70 1 0.000715
76 1 0.00071
79 1 0.000767
80 1 0.000909
82 1 0.000622
84 1 0.000618
86 1 0.000658
88 1 0.000825
90 1 0.000712
94 1 0.00058
96 1 0.000671
97 1 0.000733
103 1 0.000609
105 1 0.000738
108 1 0.000603
112 1 0.000652
115 1 0.000696
121 1 0.000765
123 1 0.00096
132 1 0.000935
135 1 0.000927
142 1 0.000777
153 1 0.000943
169 1 0.00106
175 1 0.00101
185 1 0.00102
195 1 0.00102
246 1 0.00105
458 1 0.00108
578 1 0.00108
754 1 0.00108
989 1 0.00108
1110 1 0.00109
1170 1 0.00109
1340 1 0.00109
1510 1 0.00108
1980 1 0.00109
2330 1 0.00109
2780 1 0.00109
2970 1 0.00109
3060 1 0.00109
3260 1 0.00109
3440 1 0.00109
4320 1 0.00109
4350 1 0.00109
4700 1 0.00109
5710 1 0.00109
5820 1 0.00109
6010 1 0.00109
6440 1 0.00109
7480 1 0.00109
7520 1 0.00109
11500 1 0.00109
11500 1 0.00109
12300 1 0.00109
12500 1 0.00109
14200 1 0.00109
14600 1 0.00109
14700 1 0.00109
18800 1 0.00109
20800 1 0.00109
21200 1 0.00109
21600 1 0.00109
21700 1 0.00109
22300 1 0.00109
24400 1 0.00109
25400 1 0.00109
26900 1 0.00109
27300 1 0.00109
29000 1 0.00109
29900 1 0.00109
31600 1 0.00109
35300 1 0.00109
37600 1 0.00109
43200 1 0.00109
43900 1 0.00109
44900 1 0.00109
46400 1 0.00109
46600 1 0.00109

CL59 ----> CL78

image

No. of shared pairs: :448

CL59 ----> CL125

image

No. of shared pairs: :159

CL59 ----> CL89

image

No. of shared pairs: :152

CL59 ----> CL92

image

No. of shared pairs: :69

CL59 ----> CL219

image

No. of shared pairs: :31

CL59 ----> CL41

image

No. of shared pairs: :29

CL59 ----> CL221

image

No. of shared pairs: :17

CL59 ----> CL211

image

No. of shared pairs: :15

CL59 ----> CL72

image

No. of shared pairs: :11