Cluster no. 58

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Cluster is part of supercluster: 4

Cluster characteristics:

size 5666
size_real 5666
ecount 172031
supercluster 4
annotations_summary 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/Bianca:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-CHDII
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.408401690280885
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00229438757500882
satellite_probability 6.04066957660451e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1910
S4 1840
S6 1920
comparative analysis - number of edges between species:
S5 S4 S6
S5 18800 19100 19000
S4 19100 19600 19200
S6 19000 19200 19100
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 0.999 1.000
S4 0.999 1.000 0.997
S6 1.000 0.997 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00018
Ale Ty1-GAG Ale Ty1-GAG 1 0.00018
Ale Ty1-INT Ale Ty1-INT 1 0.00018
Bianca Ty1-INT Bianca Ty1-INT 1 0.00018
SIRE Ty1-RT SIRE Ty1-RT 1 0.00018
Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00018
chromo-unclass Ty3-CHDII chromo-unclass Ty3-CHDII 1 0.00018
Tekay Ty3-GAG Tekay Ty3-GAG 1 0.00018
CRM Ty3-INT CRM Ty3-INT 1 0.00018
Reina Ty3-INT Reina Ty3-INT 1 0.00018
Tekay Ty3-RH Tekay Ty3-RH 1 0.00018
Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00018

clusters with similarity:

Cluster Number of similarity hits
122 478
60 414
110 236
44 27

clusters connected through mates:

Cluster Number of shared
read pairs		 k
110 501 0.266
122 316 0.2
60 194 0.133
44 148 0.0862
1 9 0.002
57 9 0.0039
5 8 0.00235
40 8 0.00392
22 7 0.00351
2 6 0.0014
20 6 0.00212
56 6 0.00257
87 6 0.00337
19 5 0.00185
62 5 0.00296
95 5 0.00364
9 4 0.00172
33 4 0.00199
35 4 0.0018
38 4 0.00234
59 4 0.0019
73 4 0.00193
75 4 0.00235
84 4 0.00211
94 4 0.002
107 4 0.00287
6 3 0.000634
15 3 0.00139
25 3 0.00166
27 3 0.00144
30 3 0.00107
34 3 0.00183
39 3 0.00155
45 3 0.00136
50 3 0.00144
54 3 0.00137
88 3 0.00202
115 3 0.00175
135 3 0.00222
166 3 0.00241
2960 3 0.00251
11500 3 0.00252
13000 3 0.00252
13000 3 0.00252
3 2 0.000592
4 2 0.00046
11 2 0.000603
12 2 0.000508
13 2 0.00076
37 2 0.000925
41 2 0.000878
42 2 0.00095
43 2 0.000984
47 2 0.00101
51 2 0.000903
53 2 0.00115
63 2 0.000859
66 2 0.00112
67 2 0.00124
72 2 0.000917
77 2 0.001
80 2 0.00146
101 2 0.00123
103 2 0.00104
104 2 0.00108
106 2 0.00142
123 2 0.00152
142 2 0.00128
174 2 0.00161
1290 2 0.00168
2520 2 0.00168
5650 2 0.00168
5670 2 0.00168
7400 2 0.00168
8720 2 0.00168
9120 2 0.00168
10700 2 0.00168
10800 2 0.00168
12000 2 0.00168
12700 2 0.00168
13200 2 0.00168
13800 2 0.00168
14600 2 0.00168
18400 2 0.00168
27500 2 0.00168
39500 2 0.00168
39600 2 0.00168
40300 2 0.00168
43900 2 0.00168
45900 2 0.00168
47700 2 0.00168
7 1 3e-04
10 1 0.000293
17 1 0.000373
21 1 0.000291
23 1 0.000283
28 1 0.000352
29 1 0.000295
31 1 0.000427
64 1 0.000446
65 1 0.00056
68 1 0.000431
70 1 0.000598
74 1 0.00068
76 1 0.000595
83 1 0.000438
85 1 0.000681
86 1 0.000558
89 1 0.000672
90 1 0.000596
96 1 0.000567
111 1 0.000692
113 1 0.000615
117 1 0.000594
121 1 0.000633
126 1 0.000749
130 1 0.000663
141 1 0.000788
143 1 0.000726
147 1 0.000695
158 1 0.000791
159 1 0.000707
164 1 0.000746
165 1 0.000765
168 1 0.000754
169 1 0.000825
170 1 0.000782
171 1 0.000753
175 1 0.000791
178 1 0.000789
179 1 0.000816
181 1 0.000788
194 1 0.000817
206 1 0.000803
229 1 0.000819
239 1 0.000826
250 1 0.000822
309 1 0.000825
493 1 0.000835
534 1 0.000836
591 1 0.000833
607 1 0.000838
857 1 0.000836
1180 1 0.000836
1200 1 0.000836
1420 1 0.000838
1850 1 0.000839
3140 1 0.000839
3150 1 0.000839
3320 1 0.000839
4470 1 0.000839
4860 1 0.000839
5090 1 0.000839
5130 1 0.000839
5460 1 0.000839
5560 1 0.00084
5630 1 0.000839
5920 1 0.00084
6050 1 0.00084
6310 1 0.000839
6540 1 0.000839
6780 1 0.00084
7330 1 0.000839
7870 1 0.000839
7890 1 0.000839
8250 1 0.00084
8670 1 0.000839
9360 1 0.000839
9890 1 0.00084
10000 1 0.000839
10100 1 0.000839
10700 1 0.000839
10800 1 0.000839
10900 1 0.000839
11100 1 0.000839
11200 1 0.000839
11700 1 0.00084
11900 1 0.000839
12000 1 0.000839
12900 1 0.000839
13000 1 0.000839
13300 1 0.000839
13300 1 0.000839
13500 1 0.000839
13600 1 0.000839
16000 1 0.00084
16700 1 0.00084
17100 1 0.00084
17700 1 0.00084
18100 1 0.00084
18200 1 0.00084
18300 1 0.00084
18800 1 0.00084
19500 1 0.00084
19700 1 0.00084
19800 1 0.00084
20700 1 0.00084
21100 1 0.00084
22200 1 0.00084
22200 1 0.00084
22600 1 0.00084
23300 1 0.00084
23700 1 0.00084
24100 1 0.00084
25400 1 0.00084
26100 1 0.00084
26200 1 0.00084
26900 1 0.00084
27100 1 0.00084
28500 1 0.00084
29500 1 0.00084
29500 1 0.00084
29600 1 0.00084
30200 1 0.00084
31000 1 0.00084
31900 1 0.00084
32000 1 0.00084
33600 1 0.00084
33900 1 0.00084
35500 1 0.00084
37400 1 0.00084
37700 1 0.00084
37800 1 0.00084
40200 1 0.00084
41200 1 0.00084
41300 1 0.00084
42100 1 0.00084
42200 1 0.00084
43400 1 0.00084
45300 1 0.00084
46400 1 0.00084
47700 1 0.00084
47800 1 0.00084
47800 1 0.00084
48000 1 0.00084

CL58 ----> CL110

image

No. of shared pairs: :501

CL58 ----> CL122

image

No. of shared pairs: :316

CL58 ----> CL60

image

No. of shared pairs: :194

CL58 ----> CL44

image

No. of shared pairs: :148