Cluster no. 57

Go back to cluster table

Cluster is part of supercluster: 22

Cluster characteristics:

size 5704
size_real 5704
ecount 24560
supercluster 22
annotations_summary 0.02% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.02% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-PROT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.436775818639799
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00420757363253857
satellite_probability 4.69379822868744e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1940
S4 1830
S6 1930
comparative analysis - number of edges between species:
S5 S4 S6
S5 2910 2710 2760
S4 2710 2750 2640
S6 2760 2640 2670
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.02 0.980 1.000
S4 0.98 1.030 0.993
S6 1.00 0.993 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 0.00018
Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 0.00018
Ale Ty1-INT Ale Ty1-INT 1 0.00018
Athila Ty3-GAG Athila Ty3-GAG 1 0.00018
Reina Ty3-INT Reina Ty3-INT 1 0.00018
Chlamyvir Ty3-PROT Chlamyvir Ty3-PROT 1 0.00018
Athila Ty3-RT Athila Ty3-RT 1 0.00018

clusters with similarity:

Cluster Number of similarity hits
110 5

clusters connected through mates:

Cluster Number of shared
read pairs		 k
110 116 0.0641
138 34 0.0247
10 15 0.00448
1 10 0.00225
58 9 0.0039
866 9 0.008
617 8 0.0071
28 7 0.00253
61 7 0.00303
412 7 0.00618
2540 7 0.00624
44 6 0.00365
103 6 0.00326
265 6 0.00523
381 6 0.00531
1090 6 0.00534
22 5 0.0026
32 5 0.00205
39 5 0.00269
485 5 0.00443
1250 5 0.00445
1370 5 0.00445
2140 5 0.00446
3200 5 0.00446
30 4 0.00146
49 4 0.00178
53 4 0.00239
106 4 0.003
142 4 0.00269
422 4 0.00354
468 4 0.00354
1290 4 0.00357
1770 4 0.00356
1870 4 0.00357
1930 4 0.00357
2460 4 0.00357
2600 4 0.00357
3320 4 0.00357
3520 4 0.00357
4360 4 0.00357
6710 4 0.00357
2 3 0.000713
5 3 9e-04
9 3 0.00133
19 3 0.00114
27 3 0.00149
84 3 0.00165
94 3 0.00156
692 3 0.00266
824 3 0.00267
1280 3 0.00267
1720 3 0.00267
2020 3 0.00268
2300 3 0.00268
2720 3 0.00267
2960 3 0.00268
3380 3 0.00268
3510 3 0.00268
4860 3 0.00268
6440 3 0.00268
6580 3 0.00268
7800 3 0.00268
9990 3 0.00268
10600 3 0.00268
4 2 0.000468
12 2 0.000518
13 2 0.000781
16 2 0.000917
21 2 0.000595
33 2 0.00103
37 2 0.000957
45 2 0.00094
62 2 0.00123
73 2 0.000999
83 2 0.000905
88 2 0.00142
89 2 0.00141
90 2 0.00125
98 2 0.00107
113 2 0.00129
127 2 0.00156
144 2 0.00168
444 2 0.00178
666 2 0.00178
1210 2 0.00178
1330 2 0.00178
1570 2 0.00178
1720 2 0.00178
2420 2 0.00178
2780 2 0.00178
3040 2 0.00178
3190 2 0.00179
3560 2 0.00178
4180 2 0.00178
4300 2 0.00179
4360 2 0.00178
4610 2 0.00179
4890 2 0.00179
4920 2 0.00179
4920 2 0.00179
5150 2 0.00179
5250 2 0.00179
5680 2 0.00179
5870 2 0.00179
6210 2 0.00179
6660 2 0.00179
6710 2 0.00179
6930 2 0.00179
7120 2 0.00179
7800 2 0.00179
8090 2 0.00179
8540 2 0.00179
9090 2 0.00179
9480 2 0.00179
11300 2 0.00179
11700 2 0.00179
12400 2 0.00179
12600 2 0.00179
13100 2 0.00179
13200 2 0.00179
13400 2 0.00179
13900 2 0.00179
14100 2 0.00179
14600 2 0.00179
15200 2 0.00179
17100 2 0.00179
17600 2 0.00179
20000 2 0.00179
20300 2 0.00179
22000 2 0.00179
23400 2 0.00179
25200 2 0.00179
26500 2 0.00179
26800 2 0.00179
28700 2 0.00179
29000 2 0.00179
29500 2 0.00179
30400 2 0.00179
30600 2 0.00179
31700 2 0.00179
32500 2 0.00179
33700 2 0.00179
33800 2 0.00179
34800 2 0.00179
36500 2 0.00179
37300 2 0.00179
38400 2 0.00179
41600 2 0.00179
42000 2 0.00179
42000 2 0.00179
46700 2 0.00179
47200 2 0.00179
47300 2 0.00179
47500 2 0.00179
47700 2 0.00179
48000 2 0.00179
3 1 0.000302
6 1 0.000215
7 1 0.000306
14 1 0.00044
17 1 0.000383
35 1 0.000464
38 1 0.00061
40 1 0.000507
41 1 0.000453
42 1 0.000492
46 1 0.000428
50 1 0.000498
52 1 0.000516
54 1 0.000471
56 1 0.000442
66 1 0.000583
78 1 0.000596
86 1 0.000581
87 1 0.000585
95 1 0.000769
97 1 0.000638
99 1 0.000561
107 1 0.000756
124 1 0.000872
130 1 0.000696
134 1 0.000724
137 1 0.000673
195 1 0.000844
234 1 0.000866
239 1 0.000878
312 1 0.000878
439 1 0.000883
575 1 0.000888
609 1 0.000887
611 1 0.000887
626 1 0.000887
891 1 0.00089
1290 1 0.000891
1340 1 0.00089
1400 1 0.00089
1920 1 0.000892
2080 1 0.000891
2190 1 0.000892
2290 1 0.000892
2460 1 0.000892
2660 1 0.000892
2920 1 0.000892
3180 1 0.000892
3390 1 0.000893
4100 1 0.000893
4420 1 0.000892
4490 1 0.000892
5120 1 0.000894
5450 1 0.000893
5450 1 0.000894
5470 1 0.000894
5500 1 0.000893
5550 1 0.000893
5910 1 0.000893
6290 1 0.000893
6550 1 0.000894
7060 1 0.000894
7110 1 0.000893
7350 1 0.000893
7570 1 0.000893
7580 1 0.000893
7710 1 0.000893
7870 1 0.000893
8070 1 0.000893
8440 1 0.000893
9010 1 0.000893
9200 1 0.000894
9510 1 0.000893
9560 1 0.000893
9800 1 0.000893
10000 1 0.000893
10500 1 0.000894
10700 1 0.000894
10700 1 0.000893
10700 1 0.000893
11100 1 0.000893
11200 1 0.000893
11300 1 0.000893
11800 1 0.000893
11900 1 0.000893
12100 1 0.000893
12300 1 0.000893
12500 1 0.000894
12800 1 0.000893
12800 1 0.000893
13000 1 0.000893
13400 1 0.000893
13800 1 0.000894
14500 1 0.000894
15400 1 0.000894
15700 1 0.000894
15800 1 0.000894
16200 1 0.000894
16800 1 0.000894
17300 1 0.000894
17300 1 0.000894
18000 1 0.000894
18100 1 0.000894
18500 1 0.000894
21200 1 0.000894
21600 1 0.000894
22500 1 0.000894
22900 1 0.000894
22900 1 0.000894
22900 1 0.000894
23400 1 0.000894
23800 1 0.000894
23800 1 0.000894
24500 1 0.000894
25200 1 0.000894
25300 1 0.000894
25500 1 0.000894
26400 1 0.000894
26600 1 0.000894
27700 1 0.000894
27800 1 0.000894
28800 1 0.000894
29200 1 0.000894
29700 1 0.000894
30700 1 0.000894
31400 1 0.000894
31500 1 0.000894
32000 1 0.000894
32600 1 0.000894
32600 1 0.000894
33100 1 0.000894
33200 1 0.000894
34100 1 0.000894
34100 1 0.000894
34600 1 0.000894
35000 1 0.000894
35300 1 0.000894
36700 1 0.000894
36800 1 0.000894
37000 1 0.000894
37900 1 0.000894
37900 1 0.000894
37900 1 0.000894
38100 1 0.000894
38900 1 0.000894
39100 1 0.000894
39200 1 0.000894
39500 1 0.000894
41700 1 0.000894
41800 1 0.000894
42300 1 0.000894
43300 1 0.000894
44100 1 0.000894
44100 1 0.000894
44300 1 0.000894
44900 1 0.000894
45200 1 0.000894
45500 1 0.000894
45500 1 0.000894
45600 1 0.000894
46900 1 0.000894
47100 1 0.000894
47500 1 0.000894
47700 1 0.000894

CL57 ----> CL110

image

No. of shared pairs: :116

CL57 ----> CL138

image

No. of shared pairs: :34

CL57 ----> CL10

image

No. of shared pairs: :15

CL57 ----> CL1

image

No. of shared pairs: :10