Cluster no. 53

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Cluster is part of supercluster: 4

Cluster characteristics:

size	5940
size_real	5940
ecount	145506
supercluster	4
annotations_summary	63.25% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 3.99% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatI:Ty3-INT 0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.02% Class_II/Subclass_2/Helitron:Helitron-HEL1 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness	0.685106382978723
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00353535353535354
satellite_probability	1.94805139038498e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1990
S4	1980
S6	1970

comparative analysis - number of edges between species:

	S5	S4	S6
S5	16600	16900	15800
S4	16900	16900	15900
S6	15800	15900	14700

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.994	1.000	1.010
S4	1.000	0.998	1.000
S6	1.010	1.000	0.993

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 0.00017

Ale Ty1-INT Ale Ty1-INT 1 0.00017

Ivana Ty1-INT Ivana Ty1-INT 1 0.00017

Ale Ty1-RT Ale Ty1-RT 1 0.00017

Athila Ty3-INT Athila Ty3-INT 6 0.00101

TatI Ty3-INT TatI Ty3-INT 3 0.00051

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 237 0.03990

TatV Ty3-INT TatV Ty3-INT 3757 0.63249

TatV Ty3-aRH TatV Ty3-aRH 12 0.00202

clusters with similarity:

Cluster	Number of similarity hits

25	1330
74	101
75	34
164	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

25	400	0.342
75	194	0.182
74	149	0.178
164	8	0.0113
1	6	0.00155
59	5	0.0034
10	4	0.00144
57	4	0.00239
7	3	0.00111
35	3	0.00189
44	3	0.00278
103	3	0.00234
107	3	0.00395
12	2	0.000606
30	2	0.000922
41	2	0.00122
49	2	0.00119
58	2	0.00115
60	2	0.00243
84	2	0.00159
101	2	0.00202
6760	2	0.0036
11800	2	0.00359
27400	2	0.0036
37800	2	0.0036
40800	2	0.0036
11	1	0.000373
16	1	0.000618
17	1	0.000489
19	1	0.000485
21	1	0.000357
26	1	0.000385
27	1	0.000688
31	1	0.000585
32	1	0.000534
40	1	0.00071
46	1	0.000564
47	1	0.000743
61	1	0.000573
68	1	0.000593
69	1	0.00082
76	1	0.000956
83	1	0.000607
104	1	0.000823
110	1	0.000802
122	1	0.00106
246	1	0.00169
391	1	0.00175
920	1	0.00178
3180	1	0.00179
3690	1	0.0018
5560	1	0.0018
6460	1	0.0018
6760	1	0.0018
7760	1	0.0018
12700	1	0.0018
29600	1	0.0018

CL53 ----> CL25

No. of shared pairs: :400

CL53 ----> CL75

No. of shared pairs: :194

CL53 ----> CL74

No. of shared pairs: :149