Cluster no. 51

Cluster no. 51

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Cluster is part of supercluster: 8

Cluster characteristics:

size	5946
size_real	5946
ecount	501233
supercluster	8
annotations_summary	0.03% organelle/plastid 0.02% organelle/mitochondria 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.02% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
pair_completeness	0.486871717929482
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0021874474171294
satellite_probability	2.89707838193454e-21
consensus	None
TAREAN_annotation	Other
orientation_score	0.999996018379162

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1970
S4	1970
S6	2010

comparative analysis - number of edges between species:

	S5	S4	S6
S5	53500	55300	55200
S4	55300	57000	57100
S6	55200	57100	56600

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.999	1.000	1.000
S4	1.000	0.997	1.000
S6	1.000	1.000	0.996

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00017

plastid plastid 2 0.00034

Ale Ty1-INT Ale Ty1-INT 1 0.00017

Ikeros Ty1-INT Ikeros Ty1-INT 1 0.00017

Reina Ty3-CHDII Reina Ty3-CHDII 1 0.00017

clusters with similarity:

Cluster	Number of similarity hits

14	4610
19	3270
120	910
5	762
4	411
133	391
108	18
31	2
12	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

19	723	0.285
14	518	0.238
120	235	0.169
5	160	0.0494
4	59	0.0141
133	37	0.0314
6	14	0.00306
12	11	0.00292
1	10	0.0023
119	9	0.0061
10	6	0.00184
32	5	0.00213
13	4	0.00162
63	3	0.00139
84	3	0.00174
20	2	0.000749
21	2	0.000612
49	2	0.000927
58	2	0.000903
59	2	0.00103
132	2	0.0017
178	2	0.00181
2	1	0.000243
3	1	0.000311
7	1	0.000315
9	1	0.000463
16	1	0.000479
17	1	0.000397
26	1	0.000326
27	1	0.00052
28	1	0.000374
30	1	0.000379
31	1	0.000459
35	1	0.000485
38	1	0.000646
41	1	0.000473
52	1	0.000541
60	1	0.000773
61	1	0.000451
71	1	0.00057
73	1	0.000524
74	1	0.000765
75	1	0.000651
87	1	0.000619
89	1	0.000755
90	1	0.000661
92	1	0.000815
94	1	0.000546
103	1	0.000571
107	1	0.000813
144	1	0.000909
146	1	0.000952
225	1	0.000931
391	1	0.000958
5480	1	0.000973
11700	1	0.000973
13300	1	0.000973
13700	1	0.000973
15700	1	0.000974
23200	1	0.000974
24200	1	0.000974
28400	1	0.000974
33500	1	0.000974
35000	1	0.000974

CL51 ----> CL19

No. of shared pairs: :723

CL51 ----> CL14

No. of shared pairs: :518

CL51 ----> CL120

No. of shared pairs: :235

CL51 ----> CL5

No. of shared pairs: :160

CL51 ----> CL4

No. of shared pairs: :59

CL51 ----> CL133

No. of shared pairs: :37

CL51 ----> CL6

No. of shared pairs: :14

CL51 ----> CL12

No. of shared pairs: :11

CL51 ----> CL1

No. of shared pairs: :10