Cluster no. 50

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Cluster is part of supercluster: 1

Cluster characteristics:

size 5996
size_real 5996
ecount 110425
supercluster 1
annotations_summary 0.10% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
pair_completeness 0.542181069958848
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.130587058038692
satellite_probability 7.40724439817254e-15
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1980
S4 2040
S6 1980
comparative analysis - number of edges between species:
S5 S4 S6
S5 12700 12900 11700
S4 12900 13300 12100
S6 11700 12100 11000
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 0.999 0.996
S4 0.999 0.999 1.000
S6 0.996 1.000 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 6 0.00100
SIRE Ty1-INT SIRE Ty1-INT 1 0.00017
TatV Ty3-RH TatV Ty3-RH 1 0.00017
CRM Ty3-RT CRM Ty3-RT 1 0.00017

clusters with similarity:

Cluster Number of similarity hits
5 637
117 149
24 87
96 24
64 10
14 7
47 3
77 2
98 2
119 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
5 540 0.174
117 128 0.0926
24 96 0.0479
64 41 0.0211
119 29 0.0216
98 23 0.014
4 18 0.00445
14 18 0.0088
77 10 0.0059
13 8 0.00343
10 7 0.00224
741 7 0.00781
1 6 0.00142
7 6 0.00198
2900 6 0.00672
32 5 0.00226
63 5 0.00246
71 5 0.00309
4100 4 0.00448
56 3 0.00147
58 3 0.00144
84 3 0.00188
180 3 0.00298
3030 3 0.00336
6850 3 0.00336
11 2 0.000662
21 2 0.000638
30 2 0.000798
45 2 0.00105
47 2 0.00119
49 2 0.000989
54 2 0.00106
85 2 0.00171
87 2 0.00135
99 2 0.00129
142 2 0.00159
363 2 0.00219
747 2 0.00224
1670 2 0.00224
2320 2 0.00224
4360 2 0.00224
4990 2 0.00224
5050 2 0.00224
6630 2 0.00224
7150 2 0.00224
10700 2 0.00224
10800 2 0.00224
11000 2 0.00224
14500 2 0.00224
14900 2 0.00224
15200 2 0.00224
18300 2 0.00224
23900 2 0.00224
25900 2 0.00224
2 1 0.000251
3 1 0.000325
9 1 0.000494
15 1 0.000538
16 1 0.000512
19 1 0.000417
26 1 0.000341
27 1 0.000559
31 1 0.000489
35 1 0.000519
40 1 0.000574
41 1 0.000506
52 1 0.000584
57 1 0.000498
61 1 0.000481
73 1 0.000564
74 1 0.000854
83 1 0.000504
88 1 0.000844
90 1 0.000726
115 1 0.000709
124 1 0.00109
132 1 0.000959
143 1 0.000928
149 1 0.000961
181 1 0.00103
183 1 0.00107
194 1 0.00108
234 1 0.00108
264 1 0.00109
971 1 0.00112
1080 1 0.00111
1220 1 0.00112
1430 1 0.00112
1490 1 0.00112
2200 1 0.00112
2320 1 0.00112
2350 1 0.00112
2970 1 0.00112
3030 1 0.00112
3220 1 0.00112
4410 1 0.00112
5330 1 0.00112
5570 1 0.00112
6690 1 0.00112
7170 1 0.00112
8240 1 0.00112
11600 1 0.00112
11900 1 0.00112
12100 1 0.00112
12800 1 0.00112
12800 1 0.00112
13000 1 0.00112
13400 1 0.00112
13500 1 0.00112
13900 1 0.00112
16000 1 0.00112
16300 1 0.00112
18200 1 0.00112
18300 1 0.00112
18400 1 0.00112
18400 1 0.00112
18900 1 0.00112
19700 1 0.00112
23000 1 0.00112
24400 1 0.00112
26700 1 0.00112
28100 1 0.00112
29000 1 0.00112
30000 1 0.00112
30700 1 0.00112
33300 1 0.00112
35200 1 0.00112
35700 1 0.00112
36600 1 0.00112
36800 1 0.00112
37000 1 0.00112
39200 1 0.00112
39500 1 0.00112
40000 1 0.00112
43100 1 0.00112
44400 1 0.00112
44600 1 0.00112
44600 1 0.00112
45000 1 0.00112
46400 1 0.00112
46600 1 0.00112
46900 1 0.00112
47100 1 0.00112

CL50 ----> CL5

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No. of shared pairs: :540

CL50 ----> CL117

image

No. of shared pairs: :128

CL50 ----> CL24

image

No. of shared pairs: :96

CL50 ----> CL64

image

No. of shared pairs: :41

CL50 ----> CL119

image

No. of shared pairs: :29

CL50 ----> CL98

image

No. of shared pairs: :23

CL50 ----> CL4

image

No. of shared pairs: :18

CL50 ----> CL14

image

No. of shared pairs: :18

CL50 ----> CL77

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No. of shared pairs: :10