Cluster no. 48

Cluster no. 48

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Cluster is part of supercluster: 2

Cluster characteristics:

size	6218
size_real	6218
ecount	82475
supercluster	2
annotations_summary	0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH 0.02% organelle/plastid 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness	0.605888429752066
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00048247024766806
satellite_probability	6.64175142550315e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	2030
S4	2060
S6	2130

comparative analysis - number of edges between species:

	S5	S4	S6
S5	8720	8930	9060
S4	8930	9400	9430
S6	9060	9430	9520

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.010	0.994	0.999
S4	0.994	1.010	1.000
S6	0.999	1.000	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00016

Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00016

Reina Ty3-INT Reina Ty3-INT 1 0.00016

TatII Ty3-aRH TatII Ty3-aRH 1 0.00016

clusters with similarity:

Cluster	Number of similarity hits

7	757
13	588
2	353
102	142
32	45
98	3
19	1
30	1
142	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

7	398	0.137
13	219	0.0993
2	206	0.0534
102	96	0.0732
32	84	0.0403
63	19	0.00999
61	15	0.00768
1	14	0.00343
98	11	0.00726
1700	7	0.00913
81	6	0.00351
24	5	0.00266
1640	5	0.00652
19	3	0.00132
2320	3	0.00391
10100	3	0.00392
16	2	0.00109
27	2	0.0012
38	2	0.00156
49	2	0.00106
54	2	0.00113
62	2	0.00158
97	2	0.00165
5790	2	0.00261
12700	2	0.00262
13500	2	0.00262
19900	2	0.00262
20000	2	0.00262
34700	2	0.00262
36700	2	0.00262
37800	2	0.00262
39300	2	0.00262
41100	2	0.00262
43900	2	0.00262
8	1	0.000359
10	1	0.000334
20	1	0.000415
21	1	0.000333
22	1	0.000637
28	1	0.000414
30	1	0.000421
33	1	0.00063
35	1	0.000556
37	1	0.000577
40	1	0.000619
45	1	0.000564
71	1	0.00067
83	1	0.000539
84	1	0.000682
90	1	8e-04
105	1	0.000832
112	1	0.000724
118	1	0.00126
132	1	0.00109
133	1	0.00109
142	1	0.000883
234	1	0.00125
358	1	0.00128
2260	1	0.00131
2570	1	0.00131
4460	1	0.00131
4980	1	0.00131
5100	1	0.00131
6940	1	0.00131
8420	1	0.00131
10600	1	0.00131
10900	1	0.00131
12400	1	0.00131
13900	1	0.00131
16300	1	0.00131
21100	1	0.00131
22100	1	0.00131
24500	1	0.00131
24600	1	0.00131
29600	1	0.00131
29700	1	0.00131
31500	1	0.00131
32900	1	0.00131
36800	1	0.00131
37300	1	0.00131
37500	1	0.00131
38500	1	0.00131
40600	1	0.00131
41600	1	0.00131
43200	1	0.00131
44900	1	0.00131

CL48 ----> CL7

No. of shared pairs: :398

CL48 ----> CL13

No. of shared pairs: :219

CL48 ----> CL2

No. of shared pairs: :206

CL48 ----> CL102

No. of shared pairs: :96

CL48 ----> CL32

No. of shared pairs: :84

CL48 ----> CL63

No. of shared pairs: :19

CL48 ----> CL61

No. of shared pairs: :15

CL48 ----> CL1

No. of shared pairs: :14

CL48 ----> CL98

No. of shared pairs: :11