Cluster no. 47

Cluster no. 47

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Cluster is part of supercluster: 5

Cluster characteristics:

size	6222
size_real	6222
ecount	472925
supercluster	5
annotations_summary	0.13% organelle/plastid
pair_completeness	0.594566888774987
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.173738347798136
satellite_probability	7.28450621045127e-14
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1940
S4	2230
S6	2060

comparative analysis - number of edges between species:

	S5	S4	S6
S5	45500	53000	48300
S4	53000	61300	56100
S6	48300	56100	51500

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.999	1.000	0.998
S4	1.000	0.999	0.999
S6	0.998	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 8 0.0013

clusters with similarity:

Cluster	Number of similarity hits

37	3380
93	1650
139	218
117	97
5	8
98	7
50	3
482	2
64	1
121	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

37	549	0.312
93	482	0.368
139	171	0.162
117	88	0.0685
5	13	0.00433
32	7	0.00332
16	5	0.0027
54	5	0.00278
1510	5	0.00629
641	4	0.00503
7	3	0.00102
38	3	0.00228
49	3	0.00156
4930	3	0.00378
1	2	0.000486
12	2	0.000565
19	2	0.00087
30	2	0.000831
35	2	0.00109
50	2	0.00119
56	2	0.00103
58	2	0.00101
61	2	0.00101
550	2	0.0025
1690	2	0.00252
3070	2	0.00252
3700	2	0.00252
5480	2	0.00252
35600	2	0.00253
4	1	0.000253
13	1	0.000448
18	1	0.000497
21	1	0.00033
27	1	0.000592
40	1	0.000608
41	1	0.000532
43	1	0.000612
45	1	0.000555
53	1	0.000743
59	1	0.000586
63	1	0.000518
64	1	0.000542
65	1	0.000721
72	1	0.000561
84	1	0.00067
85	1	0.000935
98	1	0.000648
100	1	0.000931
104	1	0.000689
107	1	0.00101
120	1	0.000866
121	1	0.000846
136	1	0.00107
144	1	0.00116
150	1	0.000951
250	1	0.00122
967	1	0.00125
1000	1	0.00126
1110	1	0.00126
1580	1	0.00126
2610	1	0.00126
2630	1	0.00126
2640	1	0.00126
2800	1	0.00126
3060	1	0.00126
3350	1	0.00126
3640	1	0.00126
4080	1	0.00126
4130	1	0.00126
4740	1	0.00126
5480	1	0.00126
6560	1	0.00126
7940	1	0.00126
8190	1	0.00126
8570	1	0.00126
8670	1	0.00126
11600	1	0.00126
13500	1	0.00126
18000	1	0.00126
19900	1	0.00126
23400	1	0.00126
28600	1	0.00126
29100	1	0.00126
32400	1	0.00126
40200	1	0.00126
45400	1	0.00126

CL47 ----> CL37

No. of shared pairs: :549

CL47 ----> CL93

No. of shared pairs: :482

CL47 ----> CL139

No. of shared pairs: :171

CL47 ----> CL117

No. of shared pairs: :88

CL47 ----> CL5

No. of shared pairs: :13