Cluster no. 43

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Cluster is part of supercluster: 3

Cluster characteristics:

size	6337
size_real	6337
ecount	444781
supercluster	3
annotations_summary	0.03% organelle/plastid 0.02% organelle/mitochondria 0.02% Class_I/LINE:LINE-ENDO 0.02% Class_II/Subclass_2/Helitron:Helitron-HEL1 0.02% Class_II/Subclass_2/Helitron:Helitron-HEL2
pair_completeness	0.57951146560319
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00142023039293041
satellite_probability	1.00051650786948e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	2080
S4	2140
S6	2110

comparative analysis - number of edges between species:

	S5	S4	S6
S5	47500	50600	47200
S4	50600	53900	50400
S6	47200	50400	47100

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	1.000	0.998
S4	1.000	0.999	1.000
S6	0.998	1.000	1.000

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00016

plastid plastid 2 0.00032

Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 0.00016

Helitron Helitron-HEL2 Helitron Helitron-HEL2 1 0.00016

LINE LINE-ENDO LINE LINE-ENDO 1 0.00016

clusters with similarity:

Cluster	Number of similarity hits

82	2650
68	1770
17	644
153	73
6	1
8	1
59	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

68	744	0.377
82	610	0.398
153	63	0.0638
17	53	0.0227
13	5	0.00219
112	5	0.00342
32	4	0.00185
115	4	0.00293
1	3	0.00072
7	3	0.001
8	3	0.00105
18	3	0.00145
56	3	0.00151
10	2	0.000651
15	2	0.0011
38	2	0.00146
58	2	0.000984
9	1	0.000506
11	1	0.000336
16	1	0.000524
19	1	0.000425
23	1	0.000314
24	1	0.000511
25	1	0.000686
29	1	0.000328
30	1	0.000407
47	1	0.000612
52	1	0.000601
54	1	0.000541
59	1	0.000568
61	1	0.000492
63	1	0.000504
72	1	0.000545
98	1	0.000626
107	1	0.000955
118	1	0.00114
132	1	0.001
182	1	0.00105
194	1	0.00114
236	1	0.00114
738	1	0.00118
1090	1	0.00118
9040	1	0.00118
10200	1	0.00118
15400	1	0.00118
32400	1	0.00118

CL43 ----> CL68

No. of shared pairs: :744

CL43 ----> CL82

No. of shared pairs: :610

CL43 ----> CL153

No. of shared pairs: :63

CL43 ----> CL17

No. of shared pairs: :53