Cluster no. 42

Go back to cluster table

Cluster is part of supercluster: 15

Cluster characteristics:

size 6345
size_real 6345
ecount 47161
supercluster 15
annotations_summary 0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_II/Subclass_2/Helitron:Helitron-HEL2
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
pair_completeness 0.552103718199609
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00425531914893617
satellite_probability 1.46614129999921e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 2100
S4 2180
S6 2060
comparative analysis - number of edges between species:
S5 S4 S6
S5 5180 5410 4930
S4 5410 5880 5230
S6 4930 5230 4960
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.995 0.991
S4 0.995 1.020 0.988
S6 0.991 0.988 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Helitron Helitron-HEL2 Helitron Helitron-HEL2 1 0.00016
Ale Ty1-GAG Ale Ty1-GAG 1 0.00016
Ale Ty1-RH Ale Ty1-RH 2 0.00032
Ale Ty1-RT Ale Ty1-RT 1 0.00016
TatV Ty3-PROT TatV Ty3-PROT 1 0.00016

clusters with similarity:

Cluster Number of similarity hits
73 19
87 3
8 1
35 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
73 188 0.104
87 123 0.0817
202 37 0.0373
1 8 0.00189
409 8 0.00861
667 7 0.00757
10 6 0.00191
32 6 0.00269
1450 6 0.00652
35 5 0.00256
1270 5 0.00543
2410 5 0.00544
2670 5 0.00544
3110 5 0.00544
84 4 0.00247
90 4 0.00285
1430 4 0.00435
2560 4 0.00436
4100 4 0.00436
5890 4 0.00436
8 3 0.00102
19 3 0.00124
39 3 0.00181
59 3 0.00164
69 3 0.0019
103 3 0.00183
847 3 0.00326
1970 3 0.00326
3680 3 0.00327
3680 3 0.00327
5460 3 0.00327
6200 3 0.00327
6430 3 0.00327
6770 3 0.00327
7040 3 0.00327
9490 3 0.00327
2 2 0.000499
5 2 0.000639
11 2 0.000657
13 2 0.000848
17 2 0.000831
27 2 0.0011
40 2 0.00113
45 2 0.00104
56 2 0.00097
58 2 0.00095
62 2 0.00141
71 2 0.00122
94 2 0.00116
112 2 0.0013
113 2 0.00148
132 2 0.00187
539 2 0.00217
899 2 0.00217
929 2 0.00217
989 2 0.00217
1300 2 0.00217
1590 2 0.00217
2380 2 0.00218
2500 2 0.00218
4210 2 0.00218
4720 2 0.00218
4820 2 0.00218
6360 2 0.00218
7120 2 0.00218
10200 2 0.00218
11900 2 0.00218
12500 2 0.00218
13200 2 0.00218
18300 2 0.00218
23900 2 0.00218
24200 2 0.00218
25400 2 0.00218
26000 2 0.00218
28100 2 0.00218
28200 2 0.00218
29300 2 0.00218
31300 2 0.00218
33800 2 0.00218
34900 2 0.00218
35800 2 0.00218
43600 2 0.00218
46200 2 0.00218
7 1 0.000327
9 1 0.000488
15 1 0.000531
16 1 0.000505
22 1 0.000581
26 1 0.000338
30 1 0.000395
33 1 0.000575
36 1 0.000507
38 1 0.000696
41 1 0.000499
49 1 0.000489
54 1 0.000521
57 1 0.000492
61 1 0.000475
70 1 0.000716
72 1 0.000525
83 1 0.000498
95 1 0.00091
98 1 0.000599
107 1 0.000893
119 1 0.000733
127 1 0.000923
135 1 0.000928
142 1 0.000778
178 1 0.00101
190 1 0.00106
234 1 0.00105
243 1 0.00107
254 1 0.00105
275 1 0.00106
300 1 0.00107
437 1 0.00108
447 1 0.00108
580 1 0.00109
1200 1 0.00109
1450 1 0.00109
1590 1 0.00109
2090 1 0.00109
2750 1 0.00109
3100 1 0.00109
4150 1 0.00109
4850 1 0.00109
5180 1 0.00109
5200 1 0.00109
5740 1 0.00109
6320 1 0.00109
6490 1 0.00109
6740 1 0.00109
7590 1 0.00109
7670 1 0.00109
8050 1 0.00109
8100 1 0.00109
8290 1 0.00109
8480 1 0.00109
8790 1 0.00109
8910 1 0.00109
9470 1 0.00109
9480 1 0.00109
9730 1 0.00109
9820 1 0.00109
10400 1 0.00109
11200 1 0.00109
11500 1 0.00109
11600 1 0.00109
12100 1 0.00109
12200 1 0.00109
12500 1 0.00109
12500 1 0.00109
12700 1 0.00109
13000 1 0.00109
13200 1 0.00109
13300 1 0.00109
13600 1 0.00109
14100 1 0.00109
14800 1 0.00109
17200 1 0.00109
18800 1 0.00109
19100 1 0.00109
19300 1 0.00109
19600 1 0.00109
20300 1 0.00109
20600 1 0.00109
21600 1 0.00109
21700 1 0.00109
22400 1 0.00109
22600 1 0.00109
24900 1 0.00109
25400 1 0.00109
26100 1 0.00109
26300 1 0.00109
27000 1 0.00109
27400 1 0.00109
29300 1 0.00109
31100 1 0.00109
31400 1 0.00109
34400 1 0.00109
35800 1 0.00109
36200 1 0.00109
36300 1 0.00109
36600 1 0.00109
37400 1 0.00109
38000 1 0.00109
38100 1 0.00109
38500 1 0.00109
39100 1 0.00109
39500 1 0.00109
40400 1 0.00109
40900 1 0.00109
40900 1 0.00109
41500 1 0.00109
41900 1 0.00109
43200 1 0.00109
43800 1 0.00109
43900 1 0.00109
44300 1 0.00109
45500 1 0.00109
45900 1 0.00109
46000 1 0.00109
46400 1 0.00109
46600 1 0.00109
47700 1 0.00109

CL42 ----> CL73

image

No. of shared pairs: :188

CL42 ----> CL87

image

No. of shared pairs: :123

CL42 ----> CL202

image

No. of shared pairs: :37