Cluster no. 38

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Cluster is part of supercluster: 4

Cluster characteristics:

size 6590
size_real 6590
ecount 86242
supercluster 4
annotations_summary 0.08% Class_I/LINE:LINE-ENDO
0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LINE:LINE-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness 0.726486769714435
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0239757207890744
satellite_probability 9.68040340061267e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 2140
S4 2260
S6 2190
comparative analysis - number of edges between species:
S5 S4 S6
S5 9010 9640 9100
S4 9640 10600 9890
S6 9100 9890 9410
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.996 0.996
S4 0.996 1.010 0.998
S6 0.996 0.998 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-ENDO LINE LINE-ENDO 5 0.00076
LINE LINE-RT LINE LINE-RT 1 0.00015
Ale Ty1-INT Ale Ty1-INT 1 0.00015
Athila Ty3-INT Athila Ty3-INT 1 0.00015
Tekay Ty3-INT Tekay Ty3-INT 1 0.00015
Athila Ty3-PROT Athila Ty3-PROT 4 0.00061

clusters with similarity:

Cluster Number of similarity hits
122 175
74 9
10 1
40 1
95 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
122 295 0.323
74 93 0.116
10 6 0.00218
1940 6 0.0114
2640 6 0.0114
2540 5 0.00951
2970 5 0.00952
1 4 0.00104
21 4 0.00145
29 4 0.00147
58 4 0.00234
60 4 0.00507
90 4 0.00396
2160 4 0.0076
4790 4 0.00763
5050 4 0.00763
5 3 0.0011
19 3 0.00148
32 3 0.00163
36 3 0.0019
41 3 0.00186
47 3 0.00228
55 3 0.00195
88 3 0.00367
110 3 0.00247
8250 3 0.00573
11700 3 0.00573
4 2 0.000543
7 2 0.000749
9 2 0.00121
14 2 0.00119
15 2 0.00134
22 2 0.00151
26 2 0.000781
27 2 0.00141
31 2 0.00119
43 2 0.00146
48 2 0.00156
65 2 0.00179
71 2 0.0016
103 2 0.0016
106 2 0.00272
2530 2 0.00381
7810 2 0.00382
7900 2 0.00382
8110 2 0.00382
10700 2 0.00382
17400 2 0.00382
23400 2 0.00382
25400 2 0.00382
26800 2 0.00382
28500 2 0.00382
32900 2 0.00382
32900 2 0.00382
36800 2 0.00382
37600 2 0.00382
39100 2 0.00382
40300 2 0.00382
2 1 0.000277
3 1 0.000369
6 1 0.000246
8 1 0.000393
11 1 0.000377
13 1 0.000509
17 1 0.000497
18 1 0.000574
20 1 0.000462
24 1 0.000611
25 1 0.00088
28 1 0.00046
30 1 0.000468
33 1 0.000743
40 1 0.000727
42 1 0.000696
44 1 0.000954
45 1 0.000653
46 1 0.000575
49 1 0.000605
51 1 0.000646
52 1 0.000744
54 1 0.000655
57 1 0.00061
59 1 0.000695
61 1 0.000584
66 1 0.000894
82 1 0.000825
85 1 0.00125
89 1 0.00122
93 1 0.000962
95 1 0.00142
98 1 0.000784
99 1 0.000842
108 1 0.000791
120 1 0.00113
123 1 0.00154
131 1 0.00186
134 1 0.00127
137 1 0.00112
142 1 0.00112
143 1 0.00141
151 1 0.00158
158 1 0.00168
178 1 0.00167
182 1 0.00158
210 1 0.00178
223 1 0.00186
234 1 0.00179
247 1 0.00184
608 1 0.0019
976 1 0.0019
2620 1 0.0019
3450 1 0.00191
3800 1 0.00191
4800 1 0.00191
6630 1 0.00191
7030 1 0.00191
7440 1 0.00191
7930 1 0.00191
9170 1 0.00191
11000 1 0.00191
11000 1 0.00191
11500 1 0.00191
12400 1 0.00191
13500 1 0.00191
13700 1 0.00191
16000 1 0.00191
16300 1 0.00191
16400 1 0.00191
16400 1 0.00191
16800 1 0.00191
16900 1 0.00191
18200 1 0.00191
19400 1 0.00191
20600 1 0.00191
20900 1 0.00191
22400 1 0.00191
24800 1 0.00191
25400 1 0.00191
26900 1 0.00191
30600 1 0.00191
31000 1 0.00191
31600 1 0.00191
31800 1 0.00191
32700 1 0.00191
35700 1 0.00191
37100 1 0.00191
41400 1 0.00191
41800 1 0.00191
47900 1 0.00191
48100 1 0.00191

CL38 ----> CL122

image

No. of shared pairs: :295

CL38 ----> CL74

image

No. of shared pairs: :93