Cluster no. 37

Cluster no. 37

Go back to cluster table

Cluster is part of supercluster: 5

Cluster characteristics:

size	6668
size_real	6668
ecount	364681
supercluster	5
annotations_summary	0.06% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH 0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
pair_completeness	0.548896631823461
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0349430113977205
satellite_probability	1.67410568248848e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	2170
S4	2210
S6	2290

comparative analysis - number of edges between species:

	S5	S4	S6
S5	37500	40000	39500
S4	40000	42700	42000
S6	39500	42000	41500

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.999	1.000	1.000
S4	1.000	1.000	0.999
S6	1.000	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Alesia Ty1-INT Alesia Ty1-INT 4 0.00060

Ivana Ty1-INT Ivana Ty1-INT 1 0.00015

Athila Ty3-RH Athila Ty3-RH 1 0.00015

TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 1 0.00015

clusters with similarity:

Cluster	Number of similarity hits

47	3380
54	775
117	336
134	62
150	32
121	3
662	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

54	608	0.308
47	549	0.312
117	199	0.136
150	69	0.0561
134	54	0.0438
16	13	0.00639
7	11	0.00353
121	10	0.00734
662	7	0.00714
13	6	0.00249
19	4	0.00161
158	4	0.00383
1	3	0.000699
2	3	0.000738
32	3	0.00131
49	3	0.00143
559	3	0.00306
10	2	0.000625
15	2	0.00103
30	2	0.000773
33	2	0.00111
57	2	0.000957
58	2	0.000925
59	2	0.00106
61	2	0.000925
63	2	0.000948
93	2	0.00134
113	2	0.00142
234	2	0.00198
5040	2	0.00206
6010	2	0.00206
26100	2	0.00206
28700	2	0.00206
44300	2	0.00206
47400	2	0.00206
5	1	0.000314
6	1	0.000222
8	1	0.000334
12	1	0.000269
23	1	0.000302
24	1	0.000479
29	1	0.000315
40	1	0.000548
41	1	0.000486
46	1	0.000457
48	1	0.000577
56	1	0.000472
65	1	0.000638
78	1	0.000653
87	1	0.00064
90	1	0.000686
98	1	0.00058
104	1	0.000613
111	1	0.000815
127	1	0.000878
132	1	0.00089
136	1	0.000898
142	1	0.000746
170	1	0.000944
189	1	0.000955
814	1	0.00102
1580	1	0.00102
2370	1	0.00103
3730	1	0.00103
4250	1	0.00103
4340	1	0.00103
7010	1	0.00103
8200	1	0.00103
8670	1	0.00103
8910	1	0.00103
9320	1	0.00103
11900	1	0.00103
14100	1	0.00103
17400	1	0.00103
17600	1	0.00103
34100	1	0.00103
37300	1	0.00103
41100	1	0.00103
41800	1	0.00103
44000	1	0.00103

CL37 ----> CL54

No. of shared pairs: :608

CL37 ----> CL47

No. of shared pairs: :549

CL37 ----> CL117

No. of shared pairs: :199

CL37 ----> CL150

No. of shared pairs: :69

CL37 ----> CL134

No. of shared pairs: :54

CL37 ----> CL16

No. of shared pairs: :13

CL37 ----> CL7

No. of shared pairs: :11

CL37 ----> CL121

No. of shared pairs: :10