Cluster no. 36

Cluster no. 36

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Cluster is part of supercluster: 3

Cluster characteristics:

size	6670
size_real	6670
ecount	269615
supercluster	3
annotations_summary	0.10% organelle/plastid 0.07% organelle/mitochondria 0.07% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase 0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
pair_completeness	0.518324607329843
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.588305847076462
satellite_probability	0.00114276131151818
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	2240
S4	2130
S6	2300

comparative analysis - number of edges between species:

	S5	S4	S6
S5	30800	28900	31300
S4	28900	27500	29500
S6	31300	29500	31800

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	0.996	1
S4	0.996	1.000	1
S6	1.000	1.000	1

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 5 0.00075

plastid plastid 7 0.00105

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 5 0.00075

Tork Ty1-PROT Tork Ty1-PROT 1 0.00015

clusters with similarity:

Cluster	Number of similarity hits

8	3840
17	1450
6	454
112	392
115	18
82	11
153	4

clusters connected through mates:

Cluster	Number of shared read pairs	k

17	866	0.34
8	703	0.228
112	183	0.109
115	31	0.0197
13	5	0.002
85	4	0.00299
1	3	0.000685
7	3	0.000936
10	3	0.000913
11	3	0.000941
19	3	0.00117
38	3	0.0019
61	3	0.00133
63	3	0.00137
3460	3	0.00283
2	2	0.000482
30	2	0.000748
32	2	0.000841
45	2	0.000967
54	2	0.000969
55	2	0.000962
84	2	0.00114
113	2	0.00134
153	2	0.00166
886	2	0.00188
2700	2	0.00189
18300	2	0.00189
23500	2	0.00189
23800	2	0.00189
3	1	0.000308
5	1	0.000306
12	1	0.000263
16	1	0.000471
22	1	0.000536
25	1	0.000598
28	1	0.000369
35	1	0.000477
42	1	0.000507
46	1	0.000439
56	1	0.000454
59	1	0.000506
72	1	0.000488
82	1	0.000572
87	1	0.000607
94	1	0.000536
98	1	0.000552
108	1	0.000556
114	1	0.000746
119	1	0.000663
122	1	0.00069
127	1	0.000816
130	1	0.000726
136	1	0.000833
142	1	7e-04
143	1	0.000803
147	1	0.000765
174	1	9e-04
218	1	0.000892
236	1	0.000916
591	1	0.000935
817	1	0.000938
1900	1	0.000941
5830	1	0.000944
8950	1	0.000944
9150	1	0.000944
9610	1	0.000944
11400	1	0.000944
12200	1	0.000945
12500	1	0.000944
12500	1	0.000944
30500	1	0.000944
34100	1	0.000944
39000	1	0.000944
43100	1	0.000944
45400	1	0.000944
47700	1	0.000944

CL36 ----> CL17

No. of shared pairs: :866

CL36 ----> CL8

No. of shared pairs: :703

CL36 ----> CL112

No. of shared pairs: :183

CL36 ----> CL115

No. of shared pairs: :31