Cluster no. 35

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Cluster is part of supercluster: 3

Cluster characteristics:

size 6707
size_real 6707
ecount 159979
supercluster 3
annotations_summary 0.01% Class_I/LINE:LINE-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
pair_completeness 0.527790432801822
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.203071417921574
satellite_probability 1.74461543403171e-12
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 2200
S4 2250
S6 2260
comparative analysis - number of edges between species:
S5 S4 S6
S5 17600 17600 17800
S4 17600 17700 17800
S6 17800 17800 18300
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 1.000 0.996
S4 1.000 1.000 0.995
S6 0.996 0.995 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00015
LINE LINE-RT LINE LINE-RT 1 0.00015
Ale Ty1-INT Ale Ty1-INT 1 0.00015
Reina Ty3-INT Reina Ty3-INT 1 0.00015
TatV Ty3-INT TatV Ty3-INT 1 0.00015
Tekay Ty3-INT Tekay Ty3-INT 1 0.00015
Tekay Ty3-RH Tekay Ty3-RH 1 0.00015
TatV Ty3-RT TatV Ty3-RT 1 0.00015
Tekay Ty3-RT Tekay Ty3-RT 1 0.00015

clusters with similarity:

Cluster Number of similarity hits
94 145
111 20
39 1
42 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
94 201 0.109
111 46 0.0356
20 11 0.0041
4 9 0.00215
9 9 0.00415
2 7 0.0017
11 7 0.00221
73 7 0.00364
1 6 0.00138
8 5 0.00164
15 5 0.00249
17 5 0.00198
22 5 0.00271
30 5 0.00189
33 5 0.00269
39 5 0.00281
42 5 0.00256
261 5 0.00476
1770 5 0.0048
2620 5 0.00481
23 4 0.00118
34 4 0.00269
58 4 0.0018
72 4 0.00197
83 4 0.00188
12 3 0.000793
13 3 0.00121
27 3 0.00155
32 3 0.00127
40 3 0.00159
41 3 0.00141
53 3 0.00189
59 3 0.00154
63 3 0.00138
76 3 0.00196
86 3 0.00183
87 3 0.00184
98 3 0.00168
132 3 0.00252
138 3 0.00232
168 3 0.00256
1130 3 0.00288
3390 3 0.00289
7350 3 0.00289
9990 3 0.00289
10600 3 0.00289
12500 3 0.00289
6 2 0.000437
7 2 0.000628
10 2 0.000613
19 2 0.000786
21 2 0.00061
24 2 0.00093
28 2 0.000744
45 2 0.000977
47 2 0.00109
56 2 0.000917
61 2 0.000898
75 2 0.00129
85 2 0.00152
89 2 0.0015
90 2 0.00131
93 2 0.00129
106 2 0.0016
110 2 0.00116
113 2 0.00136
117 2 0.00131
1840 2 0.00192
7010 2 0.00193
7930 2 0.00193
8090 2 0.00193
10600 2 0.00193
10900 2 0.00193
11800 2 0.00193
12100 2 0.00193
12400 2 0.00193
13500 2 0.00193
13500 2 0.00193
16400 2 0.00193
16800 2 0.00193
18300 2 0.00193
19500 2 0.00193
22300 2 0.00193
24600 2 0.00193
28000 2 0.00193
28200 2 0.00193
29800 2 0.00193
30300 2 0.00193
30900 2 0.00193
31300 2 0.00193
33900 2 0.00193
41300 2 0.00193
42200 2 0.00193
42400 2 0.00193
43000 2 0.00193
43400 2 0.00193
43500 2 0.00193
45900 2 0.00193
47300 2 0.00193
5 1 0.000308
16 1 0.000476
18 1 0.000443
31 1 0.000456
36 1 0.000477
48 1 0.000556
49 1 0.000461
50 1 0.000519
51 1 0.000485
54 1 0.00049
57 1 0.000464
62 1 0.00065
66 1 0.000613
69 1 0.000588
84 1 0.000575
88 1 0.000751
95 1 0.00082
99 1 0.000588
103 1 0.000568
112 1 0.000605
114 1 0.000758
119 1 0.000673
127 1 0.00083
130 1 0.000738
133 1 0.000841
134 1 0.00077
137 1 0.000712
158 1 0.000901
165 1 0.000866
178 1 0.000898
179 1 0.000933
181 1 0.000897
188 1 0.000912
204 1 0.000947
216 1 0.000927
241 1 0.000955
258 1 0.000944
267 1 0.000938
352 1 0.000948
467 1 0.000954
502 1 0.000957
588 1 0.000956
900 1 0.000958
927 1 0.000958
976 1 0.00096
1040 1 0.000961
1090 1 0.000958
1560 1 0.000962
2140 1 0.000961
2270 1 0.000961
3140 1 0.000962
3160 1 0.000964
3300 1 0.000963
4420 1 0.000963
4460 1 0.000962
4480 1 0.000962
4600 1 0.000964
4800 1 0.000962
5240 1 0.000964
5500 1 0.000963
5800 1 0.000964
6470 1 0.000963
6500 1 0.000964
6530 1 0.000964
6650 1 0.000964
6750 1 0.000963
7510 1 0.000963
7530 1 0.000964
7640 1 0.000964
8040 1 0.000963
8880 1 0.000963
9190 1 0.000963
9240 1 0.000964
9320 1 0.000964
9390 1 0.000964
9680 1 0.000964
9860 1 0.000964
10000 1 0.000963
10200 1 0.000963
10300 1 0.000963
10400 1 0.000963
10400 1 0.000964
11000 1 0.000964
12800 1 0.000963
12800 1 0.000963
13000 1 0.000964
13400 1 0.000963
13400 1 0.000964
13900 1 0.000964
13900 1 0.000964
14200 1 0.000964
14900 1 0.000964
16700 1 0.000964
16800 1 0.000964
16800 1 0.000964
17200 1 0.000964
17300 1 0.000964
17600 1 0.000964
17900 1 0.000964
17900 1 0.000964
18100 1 0.000964
18100 1 0.000964
18400 1 0.000964
18500 1 0.000964
18800 1 0.000964
19200 1 0.000964
19300 1 0.000964
20200 1 0.000964
20200 1 0.000964
21100 1 0.000964
21600 1 0.000964
22300 1 0.000964
22400 1 0.000964
23200 1 0.000964
23400 1 0.000964
23500 1 0.000964
24200 1 0.000964
24700 1 0.000964
24900 1 0.000964
25500 1 0.000964
26600 1 0.000964
26800 1 0.000964
26900 1 0.000964
29300 1 0.000964
29300 1 0.000964
29300 1 0.000964
29500 1 0.000964
29500 1 0.000964
30100 1 0.000964
30100 1 0.000964
30200 1 0.000964
30600 1 0.000964
30700 1 0.000964
31200 1 0.000964
31600 1 0.000964
31600 1 0.000964
32300 1 0.000964
34000 1 0.000964
34400 1 0.000964
34700 1 0.000964
35700 1 0.000964
36000 1 0.000964
36100 1 0.000964
36300 1 0.000964
37100 1 0.000964
37100 1 0.000964
37400 1 0.000964
37500 1 0.000964
37800 1 0.000964
38900 1 0.000964
39100 1 0.000964
39300 1 0.000964
39700 1 0.000964
40000 1 0.000964
40000 1 0.000964
40100 1 0.000964
40700 1 0.000964
41400 1 0.000964
42500 1 0.000964
44000 1 0.000964
44800 1 0.000964
45000 1 0.000964
45700 1 0.000964
45700 1 0.000964
45800 1 0.000964
46100 1 0.000964
46100 1 0.000964
46300 1 0.000964
46900 1 0.000964
46900 1 0.000964
47000 1 0.000964

CL35 ----> CL94

image

No. of shared pairs: :201

CL35 ----> CL111

image

No. of shared pairs: :46

CL35 ----> CL20

image

No. of shared pairs: :11