Cluster no. 31

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Cluster is part of supercluster: 1

Cluster characteristics:

size	8057
size_real	8057
ecount	1137780
supercluster	1
annotations_summary	0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.01% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness	0.554505112868995
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00608166811468288
satellite_probability	5.53369227532392e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	2650
S4	2700
S6	2700

comparative analysis - number of edges between species:

	S5	S4	S6
S5	117000	123000	124000
S4	123000	131000	132000
S6	124000	132000	132000

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	0.999	1.000
S4	0.999	0.999	1.000
S6	1.000	1.000	0.997

protein domains:

Reads annotation summary

cl_string domain Freq proportion

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 0.00012

CRM Ty3-GAG CRM Ty3-GAG 1 0.00012

TatV Ty3-INT TatV Ty3-INT 2 0.00025

clusters with similarity:

Cluster	Number of similarity hits

21	31700
64	22200
4	5250
6	3850
5	2180
71	751
29	68
26	35
108	26
153	3
3	2
51	2
373	2
12	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

64	812	0.368
6	727	0.155
4	256	0.0593
21	74	0.0218
23	60	0.0172
5	52	0.0154
71	34	0.0181
61	33	0.0141
29	29	0.00864
1	14	0.00313
7	8	0.00242
32	8	0.00323
56	7	0.00304
10	5	0.00148
119	5	0.00312
108	4	0.00211
16	3	0.00135
63	3	0.00131
84	3	0.00162
2	2	0.000471
3	2	0.000598
13	2	0.00077
22	2	0.00102
26	2	0.000626
27	2	0.000974
28	2	0.000713
38	2	0.00119
45	2	0.000924
12	1	0.000256
15	1	0.000471
18	1	0.000421
35	1	0.000456
44	1	0.000595
50	1	0.000489
51	1	0.000459
52	1	0.000506
53	1	0.000585
54	1	0.000463
55	1	0.00046
58	1	0.000427
62	1	0.000604
76	1	0.000608
83	1	0.000445
89	1	0.000688
113	1	0.000629
140	1	0.000736
142	1	0.000656
144	1	0.000814
153	1	0.00077
168	1	0.000775
223	1	0.000855
258	1	0.000849
331	1	0.000857
373	1	0.000852
663	1	0.000861
2080	1	0.000863
6220	1	0.000865
10800	1	0.000865
12100	1	0.000865
13100	1	0.000865
19300	1	0.000865
46000	1	0.000865