Cluster no. 29

Cluster no. 29

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Cluster is part of supercluster: 1

Cluster characteristics:

size	8234
size_real	8234
ecount	723628
supercluster	1
annotations_summary	0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
pair_completeness	0.303260525482748
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0257469030847705
satellite_probability	5.82675849485372e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	2790
S4	2710
S6	2730

comparative analysis - number of edges between species:

	S5	S4	S6
S5	82000	78700	82500
S4	78700	76200	79900
S6	82500	79900	83400

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	0.998	0.999
S4	0.998	1.000	1.000
S6	0.999	1.000	0.999

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatV Ty3-RT TatV Ty3-RT 1 0.00012

clusters with similarity:

Cluster	Number of similarity hits

21	24100
23	4820
129	2620
173	1700
64	1270
6	737
140	535
61	274
71	172
31	68
55	59
14	21
4	18
1	4
99	1
441	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

21	1860	0.418
23	1120	0.246
129	214	0.0863
140	186	0.0773
173	115	0.0491
4	106	0.0198
6	98	0.0171
61	74	0.0218
64	47	0.0144
1	42	0.00761
71	35	0.0119
31	29	0.00864
55	23	0.00714
109	21	0.00749
46	20	0.00585
441	11	0.00497
142	8	0.00311
99	7	0.00244
7	6	0.00138
10	6	0.00135
32	5	0.00142
108	5	0.0017
387	5	0.00226
5	4	0.000906
38	4	0.00147
13	3	0.000823
19	3	0.000809
59	3	0.000962
107	3	0.00125
1610	3	0.00136
3	2	0.000455
12	2	0.000404
16	2	0.000613
18	2	0.000585
56	2	0.000598
63	2	0.000599
94	2	0.000665
947	2	0.000905
1750	2	0.000908
2420	2	0.000907
3950	2	0.000908
7480	2	0.000908
10600	2	0.000908
20400	2	0.000908
33100	2	0.000908
39200	2	0.000908
41900	2	0.000908
2	1	0.000189
9	1	3e-04
14	1	0.000298
15	1	0.000316
27	1	0.000323
30	1	0.000262
37	1	0.000315
39	1	0.00034
43	1	0.000328
45	1	0.000311
49	1	3e-04
52	1	0.000331
58	1	0.000295
60	1	0.000405
62	1	0.00037
80	1	0.000419
83	1	0.000304
84	1	0.000344
89	1	4e-04
90	1	0.000372
96	1	0.00036
100	1	0.000402
102	1	0.000364
127	1	0.000422
136	1	0.000427
160	1	0.000451
178	1	0.000439
180	1	0.000431
196	1	0.000441
218	1	0.000442
323	1	0.000451
720	1	0.000453
1040	1	0.000453
1680	1	0.000454
1800	1	0.000454
2400	1	0.000454
2840	1	0.000454
2920	1	0.000454
3790	1	0.000454
3900	1	0.000454
4650	1	0.000454
4850	1	0.000454
5010	1	0.000454
5060	1	0.000454
5200	1	0.000454
6210	1	0.000454
6740	1	0.000454
8020	1	0.000454
8040	1	0.000454
8630	1	0.000454
9370	1	0.000454
10700	1	0.000454
11400	1	0.000454
12300	1	0.000454
13000	1	0.000454
13100	1	0.000454
13500	1	0.000454
15600	1	0.000454
17900	1	0.000454
18100	1	0.000454
22000	1	0.000454
23600	1	0.000454
27900	1	0.000454
28900	1	0.000454
32300	1	0.000454
36700	1	0.000454
37700	1	0.000454
38400	1	0.000454
39100	1	0.000454
39200	1	0.000454
41000	1	0.000454
42600	1	0.000454
45300	1	0.000454
46400	1	0.000454
46800	1	0.000454

CL29 ----> CL21

No. of shared pairs: :1857

CL29 ----> CL23

No. of shared pairs: :1115

CL29 ----> CL129

No. of shared pairs: :214

CL29 ----> CL140

No. of shared pairs: :186

CL29 ----> CL173

No. of shared pairs: :115

CL29 ----> CL4

No. of shared pairs: :106

CL29 ----> CL6

No. of shared pairs: :98

CL29 ----> CL61

No. of shared pairs: :74

CL29 ----> CL64

No. of shared pairs: :47

CL29 ----> CL1

No. of shared pairs: :42

CL29 ----> CL71

No. of shared pairs: :35

CL29 ----> CL31

No. of shared pairs: :29

CL29 ----> CL55

No. of shared pairs: :23

CL29 ----> CL109

No. of shared pairs: :21

CL29 ----> CL46

No. of shared pairs: :20

CL29 ----> CL441

No. of shared pairs: :11