Cluster no. 26

Cluster no. 26

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Cluster is part of supercluster: 2

Cluster characteristics:

size	8505
size_real	8505
ecount	2315689
supercluster	2
annotations_summary	0.05% Class_I/LINE:LINE-RT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.02% organelle/plastid 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT 0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase 0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
pair_completeness	0.351716465352829
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0091710758377425
satellite_probability	1.17007913038788e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	2910
S4	2760
S6	2840

comparative analysis - number of edges between species:

	S5	S4	S6
S5	270000	264000	258000
S4	264000	257000	250000
S6	258000	250000	245000

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.999	1.000	1.000
S4	1.000	1.000	0.999
S6	1.000	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 2 0.00024

LINE LINE-RT LINE LINE-RT 4 0.00047

Ivana Ty1-RH Ivana Ty1-RH 1 0.00012

Ivana Ty1-RT Ivana Ty1-RT 1 0.00012

Reina Ty3-GAG Reina Ty3-GAG 3 0.00035

TatV Ty3-INT TatV Ty3-INT 2 0.00024

hAT hAT-TPase hAT hAT-TPase 1 0.00012

clusters with similarity:

Cluster	Number of similarity hits

3	101000
12	75400
4	1510
31	35
5	2
19	1
94	1
108	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

12	1890	0.396
3	1820	0.43
7	56	0.0134
63	17	0.00535
96	17	0.00651
4	15	0.00289
10	10	0.00234
32	10	0.00298
1	7	0.00131
18	4	0.00123
19	4	0.00113
30	4	0.00109
108	4	0.00144
6	3	0.000537
15	3	0.000998
33	3	0.00105
54	3	0.000985
62	3	0.00118
133	3	0.00137
13	2	0.000574
24	2	0.000634
31	2	0.000626
38	2	0.000781
49	2	0.000631
80	2	0.000899
101	2	0.000809
103	2	0.000723
10900	2	0.00098
5	1	0.000235
8	1	0.000246
11	1	0.00024
14	1	0.000313
16	1	0.000322
21	1	0.000233
22	1	0.000351
25	1	0.000377
27	1	0.00034
34	1	0.000402
42	1	0.000338
44	1	0.00039
45	1	0.000328
50	1	0.000341
51	1	0.000326
53	1	0.000385
56	1	0.000314
59	1	0.000338
60	1	0.000434
61	1	0.00031
68	1	0.000315
70	1	0.000397
71	1	0.000361
84	1	0.000365
90	1	0.000396
92	1	0.000446
94	1	0.000351
100	1	0.00043
102	1	0.000386
117	1	0.000395
121	1	0.000412
142	1	0.000415
157	1	0.000487
166	1	0.000477
178	1	0.000472
225	1	0.000479
666	1	0.000489
1020	1	0.000489
1510	1	0.000489
2700	1	0.000489
3590	1	0.00049
11200	1	0.00049
12200	1	0.00049
18100	1	0.00049

CL26 ----> CL12

No. of shared pairs: :1893

CL26 ----> CL3

No. of shared pairs: :1821

CL26 ----> CL7

No. of shared pairs: :56

CL26 ----> CL63

No. of shared pairs: :17

CL26 ----> CL96

No. of shared pairs: :17

CL26 ----> CL4

No. of shared pairs: :15

CL26 ----> CL10

No. of shared pairs: :10

CL26 ----> CL32

No. of shared pairs: :10