Cluster no. 24

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Cluster is part of supercluster: 2

Cluster characteristics:

size 8642
size_real 8642
ecount 152873
supercluster 2
annotations_summary 0.03% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
pair_completeness 0.589771891096394
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0750983568618375
satellite_probability 4.43753765261888e-17
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 2870
S4 2850
S6 2930
comparative analysis - number of edges between species:
S5 S4 S6
S5 17300 16700 17100
S4 16700 16900 17000
S6 17100 17000 17200
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.987 0.999
S4 0.987 1.010 1.000
S6 0.999 1.000 0.999

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 3 0.00035
Ale Ty1-PROT Ale Ty1-PROT 1 0.00012
Tekay Ty3-INT Tekay Ty3-INT 1 0.00012
TatV Ty3-RH TatV Ty3-RH 2 0.00023

clusters with similarity:

Cluster Number of similarity hits
3 704
96 301
117 141
50 87
81 48
2 23
180 7
171 5
248 2
10 1
18 1
30 1
85 1
328 1
361 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
3 340 0.103
96 265 0.157
50 96 0.0479
117 94 0.0585
171 74 0.059
248 21 0.0183
18 12 0.00514
7 11 0.00337
13 11 0.0043
32 9 0.0037
180 8 0.00649
328 8 0.00708
2 7 0.00166
424 7 0.00621
988 7 0.00625
63 6 0.00266
48 5 0.00266
357 5 0.00441
628 5 0.00445
755 5 0.00446
1210 5 0.00446
1360 5 0.00447
1400 5 0.00446
10 4 0.0012
361 4 0.00354
721 4 0.00357
941 4 0.00358
980 4 0.00357
1340 4 0.00357
1510 4 0.00357
1610 4 0.00357
1820 4 0.00357
2100 4 0.00357
2530 4 0.00358
56 3 0.00133
61 3 0.0013
81 3 0.00145
713 3 0.00267
751 3 0.00268
1060 3 0.00268
1410 3 0.00268
1540 3 0.00268
1590 3 0.00268
1640 3 0.00268
1860 3 0.00268
1890 3 0.00268
1950 3 0.00268
2110 3 0.00269
2310 3 0.00268
2970 3 0.00268
3130 3 0.00268
3200 3 0.00268
3250 3 0.00268
3380 3 0.00268
4700 3 0.00268
5460 3 0.00269
7360 3 0.00269
8500 3 0.00269
9540 3 0.00269
10100 3 0.00269
12600 3 0.00269
13000 3 0.00269
1 2 0.000451
12 2 0.000518
26 2 0.000634
30 2 0.000733
35 2 0.00093
41 2 0.000908
49 2 0.00089
77 2 0.00104
84 2 0.0011
103 2 0.00109
110 2 0.00111
477 2 0.00178
622 2 0.00179
631 2 0.00178
1080 2 0.00179
1360 2 0.00178
1450 2 0.00179
1470 2 0.00179
1540 2 0.00179
1650 2 0.00179
1680 2 0.00179
1900 2 0.00179
2070 2 0.00179
2120 2 0.00179
2140 2 0.00179
2150 2 0.00179
2200 2 0.00179
2270 2 0.00179
2330 2 0.00179
2640 2 0.00179
2660 2 0.00179
2670 2 0.00179
2700 2 0.00179
2750 2 0.00179
3200 2 0.00179
3250 2 0.00179
3400 2 0.00179
3530 2 0.00179
3660 2 0.00179
3720 2 0.00179
3880 2 0.00179
4020 2 0.00179
4620 2 0.00179
5040 2 0.00179
5350 2 0.00179
6100 2 0.00179
6380 2 0.00179
7300 2 0.00179
8320 2 0.00179
9030 2 0.00179
10700 2 0.00179
11000 2 0.00179
11400 2 0.00179
12700 2 0.00179
13100 2 0.00179
13600 2 0.00179
14000 2 0.00179
15400 2 0.00179
15600 2 0.00179
17400 2 0.00179
18400 2 0.00179
18500 2 0.00179
18800 2 0.00179
25500 2 0.00179
28700 2 0.00179
32300 2 0.00179
34500 2 0.00179
36000 2 0.00179
36800 2 0.00179
37800 2 0.00179
38200 2 0.00179
38500 2 0.00179
38900 2 0.00179
38900 2 0.00179
40700 2 0.00179
42100 2 0.00179
42500 2 0.00179
47300 2 0.00179
47400 2 0.00179
5 1 3e-04
11 1 0.000308
15 1 0.00048
16 1 0.000459
19 1 0.000381
25 1 0.000578
27 1 0.000497
37 1 0.000479
38 1 0.000611
43 1 0.000511
44 1 0.000609
55 1 0.000468
65 1 0.000585
69 1 0.000562
76 1 0.000622
80 1 0.00077
85 1 0.000717
86 1 0.000582
93 1 0.000613
94 1 0.00052
113 1 0.000645
121 1 0.000664
127 1 0.000779
128 1 0.000787
132 1 0.000789
139 1 0.000724
142 1 0.000673
153 1 0.000795
179 1 0.000869
198 1 0.000871
236 1 0.00087
237 1 0.000883
246 1 0.000867
285 1 0.000886
410 1 0.000887
421 1 0.000889
461 1 0.000888
587 1 0.000892
632 1 0.000891
1040 1 0.000894
1220 1 0.000893
1300 1 0.000894
1330 1 0.000894
1330 1 0.000894
1500 1 0.000894
1510 1 0.000893
1520 1 0.000895
1630 1 0.000894
1670 1 0.000894
1820 1 0.000894
1920 1 0.000894
2310 1 0.000896
2380 1 0.000895
2400 1 0.000895
2450 1 0.000895
2550 1 0.000894
2900 1 0.000895
2910 1 0.000894
3030 1 0.000895
3100 1 0.000894
3120 1 0.000894
3130 1 0.000895
3220 1 0.000895
3370 1 0.000894
3410 1 0.000894
3420 1 0.000894
3520 1 0.000894
3570 1 0.000895
3600 1 0.000895
3890 1 0.000896
3910 1 0.000895
3980 1 0.000895
4200 1 0.000895
4220 1 0.000896
4240 1 0.000895
4330 1 0.000895
4380 1 0.000895
4530 1 0.000896
4560 1 0.000895
4580 1 0.000896
4650 1 0.000895
4750 1 0.000895
4770 1 0.000896
5680 1 0.000895
5700 1 0.000895
5740 1 0.000896
5740 1 0.000895
5750 1 0.000895
5770 1 0.000895
5820 1 0.000895
5860 1 0.000895
5880 1 0.000895
5880 1 0.000895
6020 1 0.000896
6170 1 0.000895
6510 1 0.000895
6800 1 0.000896
7050 1 0.000896
7140 1 0.000895
7220 1 0.000896
7250 1 0.000895
7530 1 0.000896
7620 1 0.000896
7680 1 0.000896
7720 1 0.000896
7910 1 0.000896
8070 1 0.000896
8280 1 0.000896
8300 1 0.000896
8360 1 0.000896
8380 1 0.000896
8560 1 0.000896
8560 1 0.000896
8620 1 0.000896
8640 1 0.000896
8800 1 0.000896
8860 1 0.000896
8990 1 0.000896
9450 1 0.000896
9810 1 0.000896
9860 1 0.000896
9880 1 0.000896
9990 1 0.000896
10200 1 0.000896
10300 1 0.000896
10400 1 0.000896
10500 1 0.000896
10500 1 0.000896
10600 1 0.000896
11100 1 0.000896
11200 1 0.000896
11200 1 0.000896
11300 1 0.000896
11300 1 0.000896
11400 1 0.000896
11800 1 0.000896
11800 1 0.000896
12100 1 0.000896
12200 1 0.000896
12300 1 0.000896
12900 1 0.000896
13100 1 0.000896
13100 1 0.000896
13200 1 0.000896
13200 1 0.000896
13300 1 0.000896
13400 1 0.000896
13600 1 0.000896
13900 1 0.000896
14400 1 0.000896
14500 1 0.000896
14600 1 0.000896
15900 1 0.000896
16400 1 0.000896
17300 1 0.000896
18000 1 0.000896
18100 1 0.000896
18600 1 0.000896
18900 1 0.000896
19000 1 0.000896
19300 1 0.000896
19400 1 0.000896
19800 1 0.000896
20400 1 0.000896
22200 1 0.000896
22300 1 0.000896
22300 1 0.000896
23000 1 0.000896
23200 1 0.000896
23600 1 0.000896
24400 1 0.000896
24600 1 0.000896
24800 1 0.000896
26200 1 0.000896
26300 1 0.000896
26800 1 0.000896
27000 1 0.000896
27000 1 0.000896
27000 1 0.000896
27100 1 0.000896
27200 1 0.000896
27500 1 0.000896
27900 1 0.000896
28000 1 0.000896
28300 1 0.000896
29000 1 0.000896
29900 1 0.000896
30000 1 0.000896
30100 1 0.000896
30500 1 0.000896
30800 1 0.000896
31300 1 0.000896
32400 1 0.000896
33200 1 0.000896
34100 1 0.000896
34800 1 0.000896
35100 1 0.000896
35600 1 0.000896
37000 1 0.000896
37100 1 0.000896
38500 1 0.000896
38700 1 0.000896
38800 1 0.000896
39000 1 0.000896
39200 1 0.000896
39400 1 0.000896
40100 1 0.000896
40100 1 0.000896
40200 1 0.000896
40500 1 0.000896
43000 1 0.000896
43200 1 0.000896
44800 1 0.000896
45600 1 0.000896
45700 1 0.000896
45900 1 0.000896
46100 1 0.000896
46300 1 0.000896
46400 1 0.000896
46900 1 0.000896
47300 1 0.000896
47300 1 0.000896

CL24 ----> CL3

image

No. of shared pairs: :340

CL24 ----> CL96

image

No. of shared pairs: :265

CL24 ----> CL50

image

No. of shared pairs: :96

CL24 ----> CL117

image

No. of shared pairs: :94

CL24 ----> CL171

image

No. of shared pairs: :74

CL24 ----> CL248

image

No. of shared pairs: :21

CL24 ----> CL18

image

No. of shared pairs: :12

CL24 ----> CL7

image

No. of shared pairs: :11

CL24 ----> CL13

image

No. of shared pairs: :11