Cluster no. 21

Cluster no. 21

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Cluster is part of supercluster: 1

Cluster characteristics:

size	9275
size_real	9275
ecount	1288901
supercluster	1
annotations_summary	0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
pair_completeness	0.347914547304171
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.227816711590296
satellite_probability	1.94855307132597e-11
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	3070
S4	3050
S6	3160

comparative analysis - number of edges between species:

	S5	S4	S6
S5	138000	138000	145000
S4	138000	139000	145000
S6	145000	145000	153000

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1	1.000	1.000
S4	1	1.000	0.999
S6	1	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

SIRE Ty1-INT SIRE Ty1-INT 1 0.00011

TatII Ty3-INT TatII Ty3-INT 1 0.00011

clusters with similarity:

Cluster	Number of similarity hits

31	31700
4	27400
29	24100
108	4590
71	3300
5	1280
64	19
6	6
153	2
59	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

29	1860	0.418
4	1220	0.226
108	634	0.212
71	160	0.0538
23	133	0.029
31	74	0.0218
64	70	0.0212
6	39	0.00674
5	31	0.00696
129	24	0.00951
173	14	0.00587
1	9	0.00162
10	8	0.00179
7	7	0.00159
140	6	0.00245
19	5	0.00133
32	4	0.00112
38	4	0.00145
46	4	0.00116
13	3	0.000814
15	3	0.000934
56	3	0.000885
153	3	0.00126
16	2	0.000605
30	2	0.000518
35	2	0.00061
49	2	0.000593
50	2	0.000638
51	2	0.000612
57	2	0.000595
59	2	0.000633
127	2	0.000829
9040	2	0.000891
2	1	0.000187
8	1	0.000234
12	1	2e-04
14	1	0.000294
18	1	0.000289
26	1	0.000233
33	1	0.000326
39	1	0.000335
40	1	0.000323
47	1	0.00033
48	1	0.000333
53	1	0.000357
54	1	0.000308
55	1	0.000306
58	1	0.000291
60	1	0.000398
61	1	0.000291
62	1	0.000364
63	1	0.000296
77	1	0.000328
81	1	0.000313
85	1	0.000396
88	1	0.000394
89	1	0.000393
90	1	0.000366
91	1	0.000437
94	1	0.000328
98	1	0.000334
103	1	0.000337
107	1	0.000409
109	1	0.000351
111	1	4e-04
112	1	0.00035
124	1	0.00044
149	1	0.000418
150	1	0.000399
178	1	0.000431
190	1	0.000441
207	1	0.000443
218	1	0.000433
234	1	0.000439
236	1	0.000439
713	1	0.000444
5430	1	0.000445
12600	1	0.000445
23100	1	0.000446
29200	1	0.000446
30300	1	0.000446
30900	1	0.000446
40300	1	0.000446

CL21 ----> CL29

No. of shared pairs: :1857

CL21 ----> CL4

No. of shared pairs: :1222

CL21 ----> CL108

No. of shared pairs: :634

CL21 ----> CL71

No. of shared pairs: :160

CL21 ----> CL23

No. of shared pairs: :133

CL21 ----> CL31

No. of shared pairs: :74

CL21 ----> CL64

No. of shared pairs: :70

CL21 ----> CL6

No. of shared pairs: :39

CL21 ----> CL5

No. of shared pairs: :31

CL21 ----> CL129

No. of shared pairs: :24

CL21 ----> CL173

No. of shared pairs: :14