Cluster no. 20

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Cluster is part of supercluster: 11

Cluster characteristics:

size 9506
size_real 9506
ecount 52536
supercluster 11
annotations_summary 0.03% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
0.01% Class_I/LINE:LINE-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-outgroup:Ty3-RT
0.01% Class_I/pararetrovirus:PARA-RH
pair_completeness 0.486009066750039
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000105196717862403
satellite_probability 2.89707838193454e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 3220
S4 3180
S6 3110
comparative analysis - number of edges between species:
S5 S4 S6
S5 5940 5840 5730
S4 5840 6090 5760
S6 5730 5760 5850
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.020 0.990 0.991
S4 0.990 1.020 0.987
S6 0.991 0.987 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00011
LINE LINE-RT LINE LINE-RT 1 0.00011
pararetrovirus PARA-RH pararetrovirus PARA-RH 1 0.00011
Ivana Ty1-GAG Ivana Ty1-GAG 1 0.00011
Tekay Ty3-RH Tekay Ty3-RH 1 0.00011
chromo-outgroup Ty3-RT chromo-outgroup Ty3-RT 1 0.00011
hAT hAT-TPase hAT hAT-TPase 3 0.00032

clusters with similarity:

Cluster Number of similarity hits
52 100
72 28
76 25
65 9
41 3
127 3
2 1
10 1
84 1
107 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
72 272 0.103
28 109 0.0331
76 75 0.0351
41 53 0.0194
65 22 0.00982
52 19 0.00771
1 13 0.00262
10 12 0.0031
35 11 0.0041
30 10 0.00307
7 9 0.00237
2 8 0.00169
94 8 0.00326
83 7 0.00256
982 7 0.00424
49 6 0.00216
58 6 0.00212
132 6 0.00334
419 6 0.00362
1910 6 0.00364
13 5 0.00162
45 5 0.00188
2160 5 0.00304
2830 5 0.00304
16 4 0.00148
32 4 0.00135
59 4 0.00156
63 4 0.00144
85 4 0.00208
510 4 0.00242
1360 4 0.00242
2550 4 0.00243
3440 4 0.00243
4560 4 0.00243
4870 4 0.00243
7170 4 0.00243
19 3 0.000952
27 3 0.00118
40 3 0.0012
87 3 0.00134
90 3 0.00141
127 3 0.00166
214 3 0.00175
839 3 0.00182
1090 3 0.00182
1390 3 0.00182
2060 3 0.00182
2600 3 0.00182
2900 3 0.00182
3510 3 0.00182
3620 3 0.00182
4460 3 0.00182
6140 3 0.00182
6620 3 0.00182
11000 3 0.00182
12600 3 0.00182
12600 3 0.00182
13500 3 0.00182
9 2 0.00072
11 2 0.00053
15 2 0.000766
25 2 0.000886
51 2 0.000749
54 2 0.000755
56 2 0.000717
64 2 0.000741
84 2 0.000852
103 2 0.000844
107 2 0.00108
113 2 0.000962
149 2 0.00111
208 2 0.0012
216 2 0.00119
310 2 0.0012
324 2 0.0012
1620 2 0.00121
1820 2 0.00121
2570 2 0.00121
2790 2 0.00122
3000 2 0.00121
3140 2 0.00121
4180 2 0.00121
4650 2 0.00122
7430 2 0.00122
8490 2 0.00122
8660 2 0.00122
9220 2 0.00122
11800 2 0.00122
12000 2 0.00122
12400 2 0.00122
13600 2 0.00122
23200 2 0.00122
23600 2 0.00122
24900 2 0.00122
25000 2 0.00122
26300 2 0.00122
28900 2 0.00122
30300 2 0.00122
33500 2 0.00122
37100 2 0.00122
38500 2 0.00122
39400 2 0.00122
40500 2 0.00122
40700 2 0.00122
42900 2 0.00122
43800 2 0.00122
44600 2 0.00122
45300 2 0.00122
45600 2 0.00122
47300 2 0.00122
3 1 0.000261
5 1 0.000259
6 1 0.000193
17 1 0.000319
18 1 0.000349
38 1 0.000462
48 1 0.000415
55 1 0.000375
61 1 0.000353
69 1 0.000433
73 1 0.000396
93 1 0.000463
96 1 0.000451
98 1 0.000417
126 1 0.000559
128 1 0.000556
142 1 0.000497
168 1 0.000562
178 1 0.000581
258 1 6e-04
273 1 0.000602
311 1 0.000599
312 1 0.000601
437 1 0.000604
447 1 0.000603
469 1 0.000603
541 1 0.000604
796 1 0.000606
835 1 0.000606
1180 1 0.000607
1220 1 0.000606
1670 1 0.000607
2070 1 0.000607
2100 1 0.000607
2140 1 0.000607
2190 1 0.000607
2380 1 0.000607
2450 1 0.000607
2650 1 0.000607
2680 1 0.000607
2910 1 0.000607
2960 1 0.000607
3320 1 0.000608
3340 1 0.000607
3420 1 0.000607
3500 1 0.000608
3750 1 0.000608
3830 1 0.000607
3840 1 0.000607
4020 1 0.000607
4160 1 0.000607
4720 1 0.000607
5040 1 0.000608
5080 1 0.000608
5090 1 0.000608
5540 1 0.000608
5670 1 0.000608
5820 1 0.000608
6060 1 0.000608
6140 1 0.000608
6750 1 0.000608
7280 1 0.000608
7390 1 0.000608
7560 1 0.000608
7650 1 0.000608
7660 1 0.000608
7910 1 0.000608
8160 1 0.000608
8540 1 0.000608
8610 1 0.000608
8820 1 0.000608
9170 1 0.000608
9280 1 0.000608
9630 1 0.000608
9640 1 0.000608
9980 1 0.000608
12000 1 0.000608
12100 1 0.000608
12100 1 0.000608
12200 1 0.000608
12600 1 0.000608
12800 1 0.000608
13000 1 0.000608
13200 1 0.000608
13200 1 0.000608
13300 1 0.000608
13500 1 0.000608
13500 1 0.000608
13600 1 0.000608
13800 1 0.000608
14000 1 0.000608
14100 1 0.000608
14200 1 0.000608
15100 1 0.000608
15400 1 0.000608
15400 1 0.000608
15900 1 0.000608
18100 1 0.000608
18400 1 0.000608
18900 1 0.000608
19100 1 0.000608
19200 1 0.000608
19500 1 0.000608
19600 1 0.000608
20600 1 0.000608
20900 1 0.000608
22300 1 0.000608
22600 1 0.000608
23500 1 0.000608
24000 1 0.000608
24400 1 0.000608
25700 1 0.000608
25900 1 0.000608
26300 1 0.000608
26700 1 0.000608
27400 1 0.000608
27500 1 0.000608
27600 1 0.000608
27800 1 0.000608
27800 1 0.000608
28300 1 0.000608
29600 1 0.000608
29600 1 0.000608
30400 1 0.000608
30800 1 0.000608
30800 1 0.000608
30900 1 0.000608
30900 1 0.000608
31400 1 0.000608
31500 1 0.000608
31700 1 0.000608
32100 1 0.000608
32600 1 0.000608
33600 1 0.000608
34200 1 0.000608
35200 1 0.000608
35600 1 0.000608
36500 1 0.000608
36600 1 0.000608
36700 1 0.000608
36700 1 0.000608
37700 1 0.000608
38300 1 0.000608
38400 1 0.000608
38600 1 0.000608
38700 1 0.000608
38700 1 0.000608
39900 1 0.000608
40300 1 0.000608
40800 1 0.000608
40900 1 0.000608
40900 1 0.000608
41000 1 0.000608
41200 1 0.000608
41300 1 0.000608
41300 1 0.000608
41300 1 0.000608
41500 1 0.000608
41600 1 0.000608
42200 1 0.000608
43000 1 0.000608
43400 1 0.000608
43600 1 0.000608
43800 1 0.000608
44200 1 0.000608
44300 1 0.000608
44400 1 0.000608
45000 1 0.000608
45100 1 0.000608
45400 1 0.000608
45400 1 0.000608
45600 1 0.000608
46300 1 0.000608
46400 1 0.000608
46800 1 0.000608
46800 1 0.000608
46900 1 0.000608
47500 1 0.000608
47900 1 0.000608
48000 1 0.000608
48100 1 0.000608

CL20 ----> CL72

image

No. of shared pairs: :272

CL20 ----> CL28

image

No. of shared pairs: :109

CL20 ----> CL76

image

No. of shared pairs: :75

CL20 ----> CL41

image

No. of shared pairs: :53

CL20 ----> CL65

image

No. of shared pairs: :22

CL20 ----> CL52

image

No. of shared pairs: :19

CL20 ----> CL1

image

No. of shared pairs: :13

CL20 ----> CL10

image

No. of shared pairs: :12

CL20 ----> CL35

image

No. of shared pairs: :11

CL20 ----> CL30

image

No. of shared pairs: :10