Cluster no. 19
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Cluster is part of supercluster: 8
Cluster characteristics:
| size |
9547 |
| size_real |
9547 |
| ecount |
474502 |
| supercluster |
8 |
| annotations_summary |
0.30% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.12% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.01% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.01% Class_I/LINE:LINE-ENDO
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-GAG
0.01% Class_I/LINE:LINE-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
|
| pair_completeness |
0.519738936644381 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00125693935267623 |
| satellite_probability |
2.0897667525813e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
3110 |
| S4 |
3160 |
| S6 |
3270 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
50000 |
50700 |
53100 |
| S4 |
50700 |
51400 |
54100 |
| S6 |
53100 |
54100 |
57300 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.000 |
1.000 |
0.995 |
| S4 |
1.000 |
0.999 |
1.000 |
| S6 |
0.995 |
1.000 |
1.000 |
protein domains:
protein domains:
Reads annotation summary
| |
cl_string |
domain |
Freq |
proportion |
| mitochondria
|
mitochondria
|
|
1
|
0.00010
|
| LINE LINE-ENDO
|
LINE
|
LINE-ENDO
|
1
|
0.00010
|
| LINE LINE-RH
|
LINE
|
LINE-RH
|
1
|
0.00010
|
| Angela Ty1-GAG
|
Angela
|
Ty1-GAG
|
1
|
0.00010
|
| SIRE Ty1-RT
|
SIRE
|
Ty1-RT
|
2
|
0.00021
|
| CRM Ty3-GAG
|
CRM
|
Ty3-GAG
|
11
|
0.00115
|
| Tekay Ty3-GAG
|
Tekay
|
Ty3-GAG
|
29
|
0.00304
|
| CRM Ty3-INT
|
CRM
|
Ty3-INT
|
4
|
0.00042
|
| Reina Ty3-INT
|
Reina
|
Ty3-INT
|
3
|
0.00031
|
| TatV Ty3-INT
|
TatV
|
Ty3-INT
|
1
|
0.00010
|
| CRM Ty3-RT
|
CRM
|
Ty3-RT
|
1
|
0.00010
|
|
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 1 |
4560 |
| 51 |
3270 |
| 6 |
2090 |
| 61 |
1110 |
| 2 |
998 |
| 133 |
852 |
| 12 |
736 |
| 7 |
408 |
| 100 |
345 |
| 142 |
143 |
| 4 |
9 |
| 63 |
2 |
| 13 |
1 |
| 26 |
1 |
| 48 |
1 |
| 113 |
1 |
| 120 |
1 |
| 121 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 51 |
723 |
0.285 |
| 2 |
216 |
0.047 |
| 6 |
176 |
0.0348 |
| 1 |
171 |
0.0354 |
| 100 |
136 |
0.0759 |
| 4 |
129 |
0.0276 |
| 133 |
103 |
0.062 |
| 61 |
28 |
0.0104 |
| 12 |
24 |
0.00564 |
| 5 |
18 |
0.00484 |
| 142 |
13 |
0.00692 |
| 7 |
9 |
0.00246 |
| 32 |
8 |
0.00283 |
| 63 |
7 |
0.00264 |
| 39 |
6 |
0.00266 |
| 45 |
6 |
0.00238 |
| 67 |
6 |
0.00311 |
| 1490 |
6 |
0.00397 |
| 8 |
5 |
0.00142 |
| 10 |
5 |
0.00134 |
| 14 |
5 |
0.00188 |
| 21 |
5 |
0.00133 |
| 22 |
5 |
0.00216 |
| 41 |
5 |
0.00193 |
| 58 |
5 |
0.00185 |
| 3 |
4 |
0.00108 |
| 13 |
4 |
0.00136 |
| 16 |
4 |
0.00156 |
| 26 |
4 |
0.00113 |
| 30 |
4 |
0.00128 |
| 33 |
4 |
0.00172 |
| 37 |
4 |
0.00161 |
| 40 |
4 |
0.00169 |
| 44 |
4 |
0.00197 |
| 56 |
4 |
0.00151 |
| 84 |
4 |
0.00181 |
| 85 |
4 |
0.00224 |
| 98 |
4 |
0.00177 |
| 109 |
4 |
0.00189 |
| 119 |
4 |
0.00204 |
| 121 |
4 |
0.00211 |
| 224 |
4 |
0.00257 |
| 15 |
3 |
0.00121 |
| 18 |
3 |
0.0011 |
| 20 |
3 |
0.000952 |
| 27 |
3 |
0.00125 |
| 29 |
3 |
0.000809 |
| 36 |
3 |
0.00117 |
| 38 |
3 |
0.00148 |
| 42 |
3 |
0.00124 |
| 48 |
3 |
0.00132 |
| 49 |
3 |
0.00114 |
| 57 |
3 |
0.00114 |
| 59 |
3 |
0.00124 |
| 72 |
3 |
0.0012 |
| 73 |
3 |
0.00125 |
| 83 |
3 |
0.00115 |
| 94 |
3 |
0.0013 |
| 127 |
3 |
0.00179 |
| 132 |
3 |
0.00181 |
| 6710 |
3 |
0.00199 |
| 13300 |
3 |
0.00199 |
| 25 |
2 |
0.000942 |
| 28 |
2 |
0.000633 |
| 35 |
2 |
0.000786 |
| 47 |
2 |
0.00087 |
| 62 |
2 |
0.000995 |
| 69 |
2 |
0.00092 |
| 75 |
2 |
0.000991 |
| 76 |
2 |
0.001 |
| 86 |
2 |
0.000947 |
| 87 |
2 |
0.000953 |
| 90 |
2 |
0.001 |
| 105 |
2 |
0.00103 |
| 107 |
2 |
0.00117 |
| 110 |
2 |
0.000909 |
| 113 |
2 |
0.00103 |
| 120 |
2 |
0.00107 |
| 135 |
2 |
0.0012 |
| 149 |
2 |
0.00121 |
| 153 |
2 |
0.00121 |
| 234 |
2 |
0.00129 |
| 823 |
2 |
0.00132 |
| 5230 |
2 |
0.00132 |
| 5280 |
2 |
0.00132 |
| 8750 |
2 |
0.00132 |
| 10900 |
2 |
0.00132 |
| 14200 |
2 |
0.00132 |
| 17500 |
2 |
0.00132 |
| 17900 |
2 |
0.00132 |
| 20400 |
2 |
0.00132 |
| 26400 |
2 |
0.00132 |
| 26900 |
2 |
0.00132 |
| 27400 |
2 |
0.00132 |
| 31800 |
2 |
0.00132 |
| 32900 |
2 |
0.00132 |
| 33700 |
2 |
0.00132 |
| 36700 |
2 |
0.00132 |
| 11 |
1 |
0.000275 |
| 23 |
1 |
0.00026 |
| 24 |
1 |
0.000381 |
| 34 |
1 |
0.00051 |
| 43 |
1 |
0.000425 |
| 46 |
1 |
0.000367 |
| 50 |
1 |
0.000417 |
| 52 |
1 |
0.000429 |
| 53 |
1 |
0.000485 |
| 54 |
1 |
0.000398 |
| 55 |
1 |
0.000395 |
| 60 |
1 |
0.000563 |
| 65 |
1 |
0.000475 |
| 66 |
1 |
0.000475 |
| 70 |
1 |
0.000503 |
| 71 |
1 |
0.000447 |
| 74 |
1 |
0.000559 |
| 78 |
1 |
0.000483 |
| 79 |
1 |
0.000528 |
| 88 |
1 |
0.000554 |
| 91 |
1 |
0.000644 |
| 93 |
1 |
0.000494 |
| 95 |
1 |
0.000591 |
| 97 |
1 |
0.000511 |
| 99 |
1 |
0.00046 |
| 101 |
1 |
0.000515 |
| 103 |
1 |
0.000448 |
| 104 |
1 |
0.000461 |
| 106 |
1 |
0.000581 |
| 108 |
1 |
0.000444 |
| 117 |
1 |
5e-04 |
| 122 |
1 |
0.000526 |
| 128 |
1 |
0.000601 |
| 130 |
1 |
0.000547 |
| 137 |
1 |
0.000533 |
| 138 |
1 |
0.000567 |
| 140 |
1 |
0.000584 |
| 141 |
1 |
0.00063 |
| 143 |
1 |
0.000589 |
| 185 |
1 |
0.000636 |
| 189 |
1 |
0.000631 |
| 214 |
1 |
0.000632 |
| 216 |
1 |
0.000645 |
| 230 |
1 |
0.00065 |
| 275 |
1 |
0.000653 |
| 294 |
1 |
0.000662 |
| 337 |
1 |
0.000657 |
| 351 |
1 |
0.000655 |
| 364 |
1 |
0.000656 |
| 617 |
1 |
0.000659 |
| 648 |
1 |
0.000659 |
| 704 |
1 |
0.000659 |
| 729 |
1 |
0.000659 |
| 791 |
1 |
0.000661 |
| 1040 |
1 |
0.000661 |
| 1060 |
1 |
0.000661 |
| 1490 |
1 |
0.000661 |
| 1500 |
1 |
0.000661 |
| 1620 |
1 |
0.000662 |
| 2150 |
1 |
0.000662 |
| 2860 |
1 |
0.000662 |
| 3030 |
1 |
0.000662 |
| 3250 |
1 |
0.000662 |
| 3930 |
1 |
0.000662 |
| 5130 |
1 |
0.000662 |
| 5730 |
1 |
0.000662 |
| 5810 |
1 |
0.000662 |
| 6060 |
1 |
0.000662 |
| 6060 |
1 |
0.000662 |
| 7050 |
1 |
0.000662 |
| 7240 |
1 |
0.000662 |
| 7260 |
1 |
0.000662 |
| 7340 |
1 |
0.000662 |
| 7590 |
1 |
0.000662 |
| 7700 |
1 |
0.000662 |
| 8600 |
1 |
0.000662 |
| 9280 |
1 |
0.000662 |
| 9620 |
1 |
0.000662 |
| 10600 |
1 |
0.000663 |
| 10600 |
1 |
0.000662 |
| 12600 |
1 |
0.000662 |
| 13300 |
1 |
0.000662 |
| 15300 |
1 |
0.000662 |
| 15300 |
1 |
0.000662 |
| 15700 |
1 |
0.000662 |
| 16500 |
1 |
0.000662 |
| 17300 |
1 |
0.000662 |
| 17800 |
1 |
0.000662 |
| 18300 |
1 |
0.000662 |
| 19400 |
1 |
0.000662 |
| 21000 |
1 |
0.000662 |
| 22000 |
1 |
0.000662 |
| 22700 |
1 |
0.000662 |
| 22700 |
1 |
0.000662 |
| 22900 |
1 |
0.000662 |
| 22900 |
1 |
0.000662 |
| 30500 |
1 |
0.000662 |
| 31600 |
1 |
0.000662 |
| 31800 |
1 |
0.000662 |
| 33600 |
1 |
0.000662 |
| 34200 |
1 |
0.000662 |
| 34700 |
1 |
0.000662 |
| 34700 |
1 |
0.000662 |
| 34700 |
1 |
0.000662 |
| 35000 |
1 |
0.000662 |
| 37400 |
1 |
0.000662 |
| 37600 |
1 |
0.000662 |
| 39400 |
1 |
0.000662 |
| 39500 |
1 |
0.000662 |
| 40300 |
1 |
0.000662 |
| 41600 |
1 |
0.000662 |
| 41600 |
1 |
0.000662 |
| 42100 |
1 |
0.000662 |
| 42100 |
1 |
0.000662 |
| 46000 |
1 |
0.000662 |
| 47700 |
1 |
0.000662 |
| 47900 |
1 |
0.000662 |
|
CL19 ----> CL51
No. of shared pairs: :723
CL19 ----> CL2
No. of shared pairs: :216
CL19 ----> CL6
No. of shared pairs: :176
CL19 ----> CL1
No. of shared pairs: :171
CL19 ----> CL100
No. of shared pairs: :136
CL19 ----> CL4
No. of shared pairs: :129
CL19 ----> CL133
No. of shared pairs: :103
CL19 ----> CL61
No. of shared pairs: :28
CL19 ----> CL12
No. of shared pairs: :24
CL19 ----> CL5
No. of shared pairs: :18
CL19 ----> CL142
No. of shared pairs: :13