Cluster no. 18

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Cluster is part of supercluster: 2

Cluster characteristics:

size 9621
size_real 9621
ecount 1082766
supercluster 2
annotations_summary 0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.01% Class_I/LINE:LINE-RT
0.01% Class_II/Subclass_1/TIR/PIF_Harbinger:Harbinger-TPase
pair_completeness 0.595522388059701
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00706787236254028
satellite_probability 3.78354838386418e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 3300
S4 3180
S6 3140
comparative analysis - number of edges between species:
S5 S4 S6
S5 128000 125000 119000
S4 125000 122000 116000
S6 119000 116000 111000
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.999 1.000 1.000
S4 1.000 1.000 0.999
S6 1.000 0.999 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
PIF_Harbinger Harbinger-TPase PIF_Harbinger Harbinger-TPase 1 1e-04
LINE LINE-RT LINE LINE-RT 1 1e-04
TAR Ty1-INT TAR Ty1-INT 1 1e-04

clusters with similarity:

Cluster Number of similarity hits
3 12900
96 217
434 2
24 1
117 1
390 1
400 1
430 1
561 1
825 1
1250 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
3 1270 0.373
32 49 0.0193
24 12 0.00514
96 12 0.00669
259 12 0.00957
386 11 0.00891
434 10 0.00811
333 9 0.00726
390 9 0.00734
400 8 0.00649
562 7 0.00569
693 7 0.0057
7 6 0.00178
491 6 0.00487
764 6 0.00489
825 6 0.00488
430 5 0.00406
586 5 0.00407
2020 5 0.00409
2750 5 0.00409
3510 5 0.00409
26 4 0.00123
49 4 0.0017
701 4 0.00326
748 4 0.00326
893 4 0.00326
1250 4 0.00327
1370 4 0.00327
1680 4 0.00327
1750 4 0.00327
2710 4 0.00327
2750 4 0.00327
4150 4 0.00327
1 3 0.000661
13 3 0.00113
15 3 0.00137
19 3 0.0011
43 3 0.00145
59 3 0.0014
63 3 0.00127
117 3 0.00175
561 3 0.00244
646 3 0.00244
977 3 0.00245
1930 3 0.00245
2000 3 0.00245
2590 3 0.00245
2690 3 0.00245
3180 3 0.00246
3380 3 0.00246
4970 3 0.00246
8270 3 0.00246
2 2 0.000464
5 2 0.000583
10 2 0.00058
14 2 0.000842
16 2 0.000876
22 2 0.000987
29 2 0.000585
54 2 0.000899
1200 2 0.00163
1410 2 0.00163
1580 2 0.00163
1590 2 0.00163
1760 2 0.00163
2150 2 0.00163
2560 2 0.00164
3070 2 0.00164
3890 2 0.00164
4120 2 0.00164
4390 2 0.00164
4840 2 0.00164
5220 2 0.00164
5280 2 0.00164
5340 2 0.00164
5550 2 0.00164
5870 2 0.00164
6330 2 0.00164
6340 2 0.00164
6390 2 0.00164
6480 2 0.00164
6880 2 0.00164
7100 2 0.00164
7260 2 0.00164
7490 2 0.00164
7690 2 0.00164
7970 2 0.00164
10100 2 0.00164
10300 2 0.00164
10900 2 0.00164
11500 2 0.00164
12500 2 0.00164
12700 2 0.00164
14000 2 0.00164
17300 2 0.00164
18100 2 0.00164
18200 2 0.00164
19900 2 0.00164
20700 2 0.00164
21300 2 0.00164
22200 2 0.00164
22900 2 0.00164
23800 2 0.00164
24700 2 0.00164
25300 2 0.00164
26000 2 0.00164
28300 2 0.00164
30900 2 0.00164
31100 2 0.00164
31700 2 0.00164
32900 2 0.00164
34200 2 0.00164
35000 2 0.00164
35400 2 0.00164
36200 2 0.00164
38700 2 0.00164
41600 2 0.00164
42000 2 0.00164
42900 2 0.00164
43500 2 0.00164
45200 2 0.00164
45200 2 0.00164
45600 2 0.00164
45700 2 0.00164
46200 2 0.00164
47100 2 0.00164
48100 2 0.00164
8 1 0.000309
12 1 0.000252
17 1 0.000369
20 1 0.000349
21 1 0.000289
27 1 0.000472
31 1 0.000421
35 1 0.000443
38 1 0.000574
40 1 0.000483
44 1 0.000573
47 1 0.000497
61 1 0.000415
62 1 0.000581
70 1 0.000588
71 1 0.000513
73 1 0.000475
85 1 0.000667
88 1 0.00066
101 1 0.000605
123 1 0.000743
130 1 0.00065
135 1 0.000724
214 1 0.000773
312 1 0.000806
380 1 0.000809
533 1 0.000812
1070 1 0.000817
1530 1 0.000817
1590 1 0.000818
1600 1 0.000817
1630 1 0.000817
1780 1 0.000817
2160 1 0.000817
2260 1 0.000818
2520 1 0.000818
2530 1 0.000819
2640 1 0.000818
2760 1 0.000818
2840 1 0.000819
3160 1 0.000818
3350 1 0.000818
3360 1 0.000818
3570 1 0.000818
3590 1 0.000819
3870 1 0.000818
4080 1 0.000819
4080 1 0.000819
4270 1 0.000818
4540 1 0.000819
4590 1 0.000818
4810 1 0.000819
4920 1 0.000819
5140 1 0.000819
5390 1 0.000819
5790 1 0.000819
6640 1 0.000819
6730 1 0.000819
6770 1 0.000819
7080 1 0.000819
7250 1 0.000819
7320 1 0.000819
7990 1 0.000819
8100 1 0.000819
8110 1 0.00082
8240 1 0.00082
8280 1 0.000819
8400 1 0.00082
8530 1 0.000819
8710 1 0.00082
8820 1 0.00082
9320 1 0.000819
9500 1 0.000819
9640 1 0.000819
9710 1 0.000819
10300 1 0.000819
10300 1 0.000819
10600 1 0.00082
10700 1 0.000819
10700 1 0.000819
10800 1 0.000819
11000 1 0.000819
11500 1 0.000819
11700 1 0.000819
11800 1 0.000819
11900 1 0.000819
11900 1 0.000819
11900 1 0.000819
12500 1 0.000819
12600 1 0.000819
13600 1 0.00082
13600 1 0.000819
13900 1 0.000819
14000 1 0.000819
14800 1 0.000819
15200 1 0.000819
15300 1 0.000819
16600 1 0.000819
17100 1 0.000819
18100 1 0.000819
18700 1 0.000819
18900 1 0.000819
19000 1 0.000819
19200 1 0.000819
19200 1 0.000819
19500 1 0.000819
19700 1 0.000819
21700 1 0.000819
21800 1 0.000819
21900 1 0.000819
22000 1 0.000819
22400 1 0.000819
23700 1 0.000819
23900 1 0.000819
24500 1 0.000819
25100 1 0.000819
25400 1 0.000819
25600 1 0.000819
26000 1 0.000819
26200 1 0.000819
27000 1 0.000819
27800 1 0.000819
28700 1 0.000819
29500 1 0.000819
29600 1 0.000819
30300 1 0.000819
30400 1 0.000819
30600 1 0.000819
30600 1 0.000819
30800 1 0.000819
30800 1 0.000819
32200 1 0.000819
32200 1 0.000819
32600 1 0.000819
32800 1 0.000819
33700 1 0.000819
34000 1 0.000819
34700 1 0.000819
34900 1 0.000819
35600 1 0.000819
35700 1 0.000819
35800 1 0.000819
35900 1 0.000819
35900 1 0.000819
36900 1 0.000819
37300 1 0.000819
37300 1 0.000819
37400 1 0.000819
38000 1 0.000819
38300 1 0.000819
38300 1 0.000819
38500 1 0.000819
38600 1 0.000819
38900 1 0.000819
40300 1 0.000819
40700 1 0.000819
41000 1 0.000819
41500 1 0.000819
41700 1 0.000819
41900 1 0.000819
41900 1 0.000819
42700 1 0.000819
43300 1 0.000819
43700 1 0.000819
43900 1 0.000819
44100 1 0.000819
44400 1 0.000819
44900 1 0.000819
45100 1 0.000819
45400 1 0.000819
45500 1 0.000819
46700 1 0.000819
47000 1 0.000819
47000 1 0.000819
47100 1 0.000819
47300 1 0.000819
48000 1 0.000819

CL18 ----> CL3

image

No. of shared pairs: :1271

CL18 ----> CL32

image

No. of shared pairs: :49

CL18 ----> CL24

image

No. of shared pairs: :12

CL18 ----> CL96

image

No. of shared pairs: :12

CL18 ----> CL259

image

No. of shared pairs: :12

CL18 ----> CL386

image

No. of shared pairs: :11

CL18 ----> CL434

image

No. of shared pairs: :10