Cluster no. 12

Cluster no. 12

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Cluster is part of supercluster: 2

Cluster characteristics:

size	10813
size_real	10813
ecount	2309795
supercluster	2
annotations_summary	0.03% organelle/plastid 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG 0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
pair_completeness	0.326260272292408
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0254323499491353
satellite_probability	5.49941859234325e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	3560
S4	3700
S6	3550

comparative analysis - number of edges between species:

	S5	S4	S6
S5	242000	264000	242000
S4	264000	287000	262000
S6	242000	262000	244000

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.999	1.000	0.998
S4	1.000	1.000	0.996
S6	0.998	0.996	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 3 2.8e-04

SIRE Ty1-GAG SIRE Ty1-GAG 1 9.2e-05

Tork Ty1-INT Tork Ty1-INT 1 9.2e-05

Reina Ty3-INT Reina Ty3-INT 2 1.8e-04

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 1 9.2e-05

clusters with similarity:

Cluster	Number of similarity hits

26	75400
7	24700
63	5470
6	3350
19	736
1	682
4	441
61	156
31	1
32	1
51	1
87	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

26	1890	0.396
7	1310	0.267
63	927	0.239
4	559	0.0947
1	177	0.0292
61	54	0.0137
3	49	0.00992
6	36	0.00572
19	24	0.00564
2	17	0.00291
32	15	0.00369
13	13	0.0031
51	11	0.00292
30	8	0.00183
5	7	0.00141
56	4	0.00103
142	4	0.00128
10	3	0.000603
27	3	0.000823
35	3	0.000793
49	3	0.000774
84	3	0.00087
2310	3	0.00109
24	2	0.000518
29	2	0.000404
40	2	0.000556
47	2	0.000565
53	2	0.000606
57	2	0.000518
58	2	0.000508
103	2	0.000576
107	2	0.000678
143	2	0.000682
168	2	0.000694
5000	2	0.000728
9990	2	0.000728
9	1	0.000258
11	1	0.000205
15	1	0.000269
16	1	0.000262
18	1	0.000252
21	1	2e-04
28	1	0.000227
31	1	0.000256
36	1	0.000263
37	1	0.000269
45	1	0.000266
54	1	0.000267
59	1	0.000273
60	1	0.000332
62	1	0.000308
73	1	0.000275
78	1	0.000302
80	1	0.000341
85	1	0.000331
95	1	0.000341
96	1	0.000301
98	1	0.000286
106	1	0.000338
108	1	0.000287
110	1	0.000291
113	1	0.000314
119	1	0.000313
120	1	0.000322
144	1	0.000354
146	1	0.000361
162	1	0.000362
183	1	0.000359
200	1	0.000361
205	1	0.00036
234	1	0.000359
258	1	0.000361
264	1	0.00036
391	1	0.000362
395	1	0.000363
1520	1	0.000364
6710	1	0.000364
8680	1	0.000364
18700	1	0.000364
18700	1	0.000364
22600	1	0.000364
24400	1	0.000364
41500	1	0.000364
46100	1	0.000364

CL12 ----> CL26

No. of shared pairs: :1893

CL12 ----> CL7

No. of shared pairs: :1306

CL12 ----> CL63

No. of shared pairs: :927

CL12 ----> CL4

No. of shared pairs: :559

CL12 ----> CL1

No. of shared pairs: :177

CL12 ----> CL61

No. of shared pairs: :54

CL12 ----> CL3

No. of shared pairs: :49

CL12 ----> CL6

No. of shared pairs: :36

CL12 ----> CL19

No. of shared pairs: :24

CL12 ----> CL2

No. of shared pairs: :17

CL12 ----> CL32

No. of shared pairs: :15

CL12 ----> CL13

No. of shared pairs: :13

CL12 ----> CL51

No. of shared pairs: :11