Cluster no. 8

Cluster no. 8

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Cluster is part of supercluster: 3

Cluster characteristics:

size	11779
size_real	11779
ecount	881952
supercluster	3
annotations_summary	0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase 0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.01% organelle/plastid 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII 0.01% Class_I/LINE:LINE-RT 0.01% Class_II/Subclass_2/Helitron:Helitron-HEL2 0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
pair_completeness	0.488939451396789
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0256388487987096
satellite_probability	2.65679471942832e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	4030
S4	3790
S6	3970

comparative analysis - number of edges between species:

	S5	S4	S6
S5	104000	96800	102000
S4	96800	89500	94700
S6	102000	94700	101000

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	1.000	0.996
S4	1.000	1.000	0.998
S6	0.996	0.998	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 8.5e-05

Helitron Helitron-HEL2 Helitron Helitron-HEL2 1 8.5e-05

LINE LINE-RT LINE LINE-RT 1 8.5e-05

Ale Ty1-INT Ale Ty1-INT 2 1.7e-04

Ikeros Ty1-PROT Ikeros Ty1-PROT 1 8.5e-05

SIRE Ty1-RT SIRE Ty1-RT 2 1.7e-04

Reina Ty3-CHDII Reina Ty3-CHDII 1 8.5e-05

CRM Ty3-PROT CRM Ty3-PROT 1 8.5e-05

Reina Ty3-RT Reina Ty3-RT 1 8.5e-05

hAT hAT-TPase hAT hAT-TPase 2 1.7e-04

clusters with similarity:

Cluster	Number of similarity hits

11	15000
112	7300
36	3840
82	3160
151	183
115	72
4	53
17	4
242	3
42	1
43	1
49	1
84	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

11	1670	0.403
36	703	0.228
112	487	0.185
82	362	0.133
115	112	0.0441
151	97	0.0455
17	26	0.0074
56	21	0.00663
1	15	0.00281
7	13	0.00312
13	9	0.0026
4	8	0.00154
32	7	0.0021
94	7	0.00247
10	6	0.00141
49	6	0.0019
19	5	0.00142
30	5	0.00137
35	5	0.00164
61	5	0.00156
42	3	0.00102
43	3	0.00105
45	3	0.00099
63	3	0.000949
84	3	0.0011
910	3	0.00148
996	3	0.00148
16	2	0.000648
27	2	0.000685
54	2	0.000661
59	2	0.000681
62	2	0.000793
64	2	0.00065
103	2	0.000728
198	2	0.000974
3810	2	0.000989
10600	2	0.000989
12100	2	0.000989
36100	2	0.000989
43800	2	0.000989
2	1	0.000196
15	1	0.000335
18	1	0.000309
21	1	0.000234
26	1	0.000246
28	1	0.000272
33	1	0.000351
37	1	0.000334
38	1	0.000393
39	1	0.000362
40	1	0.000348
41	1	0.000322
46	1	0.000309
48	1	0.000359
67	1	0.00041
68	1	0.000317
69	1	0.000372
72	1	0.000332
73	1	0.000344
77	1	0.000354
81	1	0.000337
90	1	0.000399
93	1	0.000394
96	1	0.000385
104	1	0.000373
106	1	0.000447
111	1	0.000439
113	1	0.000407
121	1	0.000415
122	1	0.000414
128	1	0.000459
133	1	0.00046
134	1	0.000438
142	1	0.000418
149	1	0.00046
153	1	0.000462
168	1	0.000464
200	1	0.000489
214	1	0.000477
234	1	0.000486
243	1	0.000491
475	1	0.000492
508	1	0.000492
564	1	0.000493
1620	1	0.000494
3780	1	0.000494
4980	1	0.000494
6230	1	0.000494
6350	1	0.000494
7300	1	0.000494
8040	1	0.000494
8680	1	0.000494
9150	1	0.000494
11400	1	0.000494
13000	1	0.000494
13200	1	0.000494
13800	1	0.000494
15400	1	0.000494
15900	1	0.000494
16400	1	0.000494
17800	1	0.000494
18400	1	0.000494
19400	1	0.000494
20700	1	0.000494
21700	1	0.000494
25600	1	0.000494
26100	1	0.000494
30100	1	0.000494
33100	1	0.000494
37000	1	0.000494
37600	1	0.000494
39000	1	0.000494
41100	1	0.000494

CL8 ----> CL11

No. of shared pairs: :1674

CL8 ----> CL36

No. of shared pairs: :703

CL8 ----> CL112

No. of shared pairs: :487

CL8 ----> CL82

No. of shared pairs: :362

CL8 ----> CL115

No. of shared pairs: :112

CL8 ----> CL151

No. of shared pairs: :97

CL8 ----> CL17

No. of shared pairs: :26

CL8 ----> CL56

No. of shared pairs: :21

CL8 ----> CL1

No. of shared pairs: :15

CL8 ----> CL7

No. of shared pairs: :13