Cluster no. 7

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Cluster is part of supercluster: 2

Cluster characteristics:

size 11882
size_real 11882
ecount 1833503
supercluster 2
annotations_summary 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.01% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% Class_I/LINE:LINE-ENDO
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.469090009891197
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00311395387981821
satellite_probability 3.54668226065428e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 3930
S4 4000
S6 3940
comparative analysis - number of edges between species:
S5 S4 S6
S5 208000 206000 203000
S4 206000 205000 202000
S6 203000 202000 198000
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 0.999 1.000
S4 0.999 0.999 1.000
S6 1.000 1.000 0.999

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 8.4e-05
LINE LINE-ENDO LINE LINE-ENDO 1 8.4e-05
Ivana Ty1-RT Ivana Ty1-RT 1 8.4e-05
Phygy Ty3-GAG Phygy Ty3-GAG 1 8.4e-05
Tekay Ty3-INT Tekay Ty3-INT 2 1.7e-04
Tekay Ty3-RH Tekay Ty3-RH 1 8.4e-05
CRM Ty3-RT CRM Ty3-RT 1 8.4e-05
Reina Ty3-RT Reina Ty3-RT 1 8.4e-05
TatV Ty3-RT TatV Ty3-RT 1 8.4e-05
Tekay Ty3-RT Tekay Ty3-RT 1 8.4e-05

clusters with similarity:

Cluster Number of similarity hits
12 24700
63 10000
105 5450
2 4260
1 3120
48 757
142 422
19 408
13 150
61 25
234 5
181 3
3 1
6 1
729 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
12 1310 0.267
63 493 0.15
105 411 0.159
48 398 0.137
13 139 0.0387
2 107 0.0204
26 56 0.0134
1 33 0.00604
181 26 0.0117
5 19 0.00436
4 18 0.00339
61 18 0.00539
11 14 0.00327
8 13 0.00312
28 13 0.00342
70 12 0.00457
6 11 0.00193
24 11 0.00337
37 11 0.00353
3 10 0.00231
17 9 0.00247
19 9 0.00246
20 9 0.00237
234 9 0.00412
16 8 0.00249
31 8 0.00242
54 8 0.00254
69 8 0.00284
21 7 0.00159
33 7 0.00236
56 7 0.00213
10 6 0.00137
18 6 0.00178
29 6 0.00138
49 6 0.00183
50 6 0.00198
115 6 0.00225
117 6 0.00227
14 5 0.00151
23 5 0.00111
27 5 0.00164
30 5 0.00133
41 5 0.00155
59 5 0.00163
72 5 0.00159
32 4 0.00115
46 4 0.00119
81 4 0.00129
90 4 0.00152
97 4 0.00154
101 4 0.00155
113 4 0.00155
2000 4 0.00186
9 3 0.000914
22 3 0.00102
36 3 0.000936
43 3 0.001
47 3 0.00102
53 3 0.00111
55 3 0.000947
62 3 0.00113
68 3 0.000915
71 3 0.00104
76 3 0.00114
84 3 0.00105
87 3 0.0011
104 3 0.00107
127 3 0.0013
142 3 0.00119
158 3 0.00135
729 3 0.00139
6940 3 0.0014
25 2 0.000724
34 2 0.00077
35 2 0.000628
38 2 0.000749
39 2 0.000692
40 2 0.000667
45 2 0.000634
64 2 0.000625
73 2 0.00066
77 2 0.000677
80 2 0.000858
83 2 0.000617
85 2 0.000824
86 2 0.000727
94 2 0.000677
96 2 0.000735
102 2 0.000742
107 2 0.000851
108 2 0.000692
121 2 0.000788
135 2 0.000866
136 2 0.000874
144 2 9e-04
149 2 0.00087
159 2 0.000844
165 2 0.000883
170 2 0.000895
7310 2 0.000931
9150 2 0.000931
12200 2 0.000931
19100 2 0.000931
29800 2 0.000931
38000 2 0.000931
42500 2 0.000931
42 1 0.000327
51 1 0.000315
57 1 0.000306
58 1 3e-04
60 1 0.000414
67 1 0.00039
74 1 0.000412
89 1 0.000409
93 1 0.000375
95 1 0.000429
98 1 0.000345
99 1 0.000356
103 1 0.000348
106 1 0.000424
110 1 0.000352
111 1 0.000416
114 1 0.000412
119 1 0.000385
120 1 0.000398
130 1 0.000406
134 1 0.000415
139 1 0.000414
143 1 0.000428
147 1 0.000417
150 1 0.000415
155 1 0.000457
178 1 0.00045
185 1 0.000452
188 1 0.000453
198 1 0.000459
200 1 0.000461
208 1 0.00046
212 1 0.000457
215 1 0.000463
216 1 0.000457
220 1 0.000454
226 1 0.000459
239 1 0.000461
246 1 0.000458
247 1 0.000461
273 1 0.000462
298 1 0.000461
314 1 0.000463
346 1 0.000462
358 1 0.000462
401 1 0.000464
417 1 0.000463
452 1 0.000464
467 1 0.000463
469 1 0.000463
490 1 0.000464
544 1 0.000463
552 1 0.000464
584 1 0.000463
615 1 0.000465
620 1 0.000464
685 1 0.000464
859 1 0.000464
1250 1 0.000465
1340 1 0.000465
1430 1 0.000465
1520 1 0.000465
1700 1 0.000465
1780 1 0.000465
1830 1 0.000465
1920 1 0.000465
2200 1 0.000465
2220 1 0.000465
2500 1 0.000465
2520 1 0.000465
2810 1 0.000466
3020 1 0.000465
3170 1 0.000465
3460 1 0.000465
4070 1 0.000465
4390 1 0.000466
4940 1 0.000465
5320 1 0.000465
5650 1 0.000466
5880 1 0.000465
6380 1 0.000466
8150 1 0.000465
8730 1 0.000465
9650 1 0.000465
10700 1 0.000465
10900 1 0.000465
10900 1 0.000466
12600 1 0.000466
13500 1 0.000466
16500 1 0.000466
19200 1 0.000466
19800 1 0.000466
21400 1 0.000466
21400 1 0.000466
21900 1 0.000466
22400 1 0.000466
23700 1 0.000466
26800 1 0.000466
27900 1 0.000466
28100 1 0.000466
29200 1 0.000466
29800 1 0.000466
30700 1 0.000466
31300 1 0.000466
33700 1 0.000466
34300 1 0.000466
34800 1 0.000466
35900 1 0.000466
36100 1 0.000466
36800 1 0.000466
37100 1 0.000466
37800 1 0.000466
38300 1 0.000466
40700 1 0.000466
40800 1 0.000466
41200 1 0.000466
43800 1 0.000466
44400 1 0.000466
44500 1 0.000466
44600 1 0.000466

CL7 ----> CL12

image

No. of shared pairs: :1306

CL7 ----> CL63

image

No. of shared pairs: :493

CL7 ----> CL105

image

No. of shared pairs: :411

CL7 ----> CL48

image

No. of shared pairs: :398

CL7 ----> CL13

image

No. of shared pairs: :139

CL7 ----> CL2

image

No. of shared pairs: :107

CL7 ----> CL26

image

No. of shared pairs: :56

CL7 ----> CL1

image

No. of shared pairs: :33

CL7 ----> CL181

image

No. of shared pairs: :26

CL7 ----> CL5

image

No. of shared pairs: :19

CL7 ----> CL4

image

No. of shared pairs: :18

CL7 ----> CL61

image

No. of shared pairs: :18

CL7 ----> CL11

image

No. of shared pairs: :14

CL7 ----> CL8

image

No. of shared pairs: :13

CL7 ----> CL28

image

No. of shared pairs: :13

CL7 ----> CL70

image

No. of shared pairs: :12

CL7 ----> CL6

image

No. of shared pairs: :11

CL7 ----> CL24

image

No. of shared pairs: :11

CL7 ----> CL37

image

No. of shared pairs: :11

CL7 ----> CL3

image

No. of shared pairs: :10