Cluster no. 6
Go back to cluster table
Cluster is part of supercluster: 1
Cluster characteristics:
| size |
13746 |
| size_real |
13746 |
| ecount |
751590 |
| supercluster |
1 |
| annotations_summary |
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% Class_I/LINE:LINE-ENDO
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
|
| pair_completeness |
0.319827172347576 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0419030990833697 |
| satellite_probability |
1.22070855357341e-18 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
4620 |
| S4 |
4540 |
| S6 |
4580 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
84900 |
82700 |
85200 |
| S4 |
82700 |
80500 |
82600 |
| S6 |
85200 |
82600 |
85000 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.998 |
1.000 |
1.000 |
| S4 |
1.000 |
1.000 |
0.999 |
| S6 |
1.000 |
0.999 |
0.999 |
protein domains:
protein domains:
Reads annotation summary
| |
cl_string |
domain |
Freq |
proportion |
| LINE LINE-ENDO
|
LINE
|
LINE-ENDO
|
1
|
7.3e-05
|
| Athila Ty3-INT
|
Athila
|
Ty3-INT
|
1
|
7.3e-05
|
| TatV Ty3-INT
|
TatV
|
Ty3-INT
|
2
|
1.5e-04
|
| Tcn1 Ty3-INT
|
Tcn1
|
Ty3-INT
|
1
|
7.3e-05
|
| TatIV_Ogre Ty3-RH
|
TatIV_Ogre
|
Ty3-RH
|
4
|
2.9e-04
|
| Reina Ty3-RT
|
Reina
|
Ty3-RT
|
1
|
7.3e-05
|
| TatV Ty3-aRH
|
TatV
|
Ty3-aRH
|
1
|
7.3e-05
|
|
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 1 |
16400 |
| 4 |
7800 |
| 61 |
6180 |
| 31 |
3850 |
| 12 |
3350 |
| 19 |
2090 |
| 108 |
1840 |
| 29 |
737 |
| 5 |
707 |
| 36 |
454 |
| 115 |
50 |
| 153 |
29 |
| 17 |
22 |
| 21 |
6 |
| 64 |
2 |
| 2 |
1 |
| 7 |
1 |
| 43 |
1 |
| 77 |
1 |
| 84 |
1 |
| 120 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 1 |
2280 |
0.333 |
| 4 |
1490 |
0.223 |
| 31 |
727 |
0.155 |
| 61 |
673 |
0.142 |
| 108 |
619 |
0.145 |
| 19 |
176 |
0.0348 |
| 5 |
172 |
0.0299 |
| 29 |
98 |
0.0171 |
| 21 |
39 |
0.00674 |
| 12 |
36 |
0.00572 |
| 142 |
27 |
0.0069 |
| 115 |
20 |
0.00492 |
| 32 |
15 |
0.00309 |
| 51 |
14 |
0.00306 |
| 2 |
12 |
0.00181 |
| 7 |
11 |
0.00193 |
| 10 |
8 |
0.00139 |
| 71 |
8 |
0.00187 |
| 13 |
7 |
0.0014 |
| 54 |
7 |
0.00154 |
| 56 |
7 |
0.00149 |
| 64 |
6 |
0.00131 |
| 153 |
6 |
0.00163 |
| 260 |
6 |
0.00168 |
| 103 |
5 |
0.00117 |
| 17 |
4 |
0.000795 |
| 63 |
4 |
0.000854 |
| 84 |
4 |
0.000942 |
| 107 |
4 |
0.00107 |
| 591 |
4 |
0.00113 |
| 25 |
3 |
0.000722 |
| 26 |
3 |
0.000537 |
| 40 |
3 |
0.000683 |
| 45 |
3 |
0.000659 |
| 49 |
3 |
0.000642 |
| 55 |
3 |
0.000658 |
| 58 |
3 |
0.000634 |
| 59 |
3 |
0.000673 |
| 77 |
3 |
0.00069 |
| 132 |
3 |
0.000812 |
| 14 |
2 |
0.000426 |
| 16 |
2 |
0.000434 |
| 23 |
2 |
0.00034 |
| 27 |
2 |
0.00045 |
| 28 |
2 |
0.000385 |
| 30 |
2 |
0.000388 |
| 35 |
2 |
0.000437 |
| 41 |
2 |
0.000432 |
| 52 |
2 |
0.000458 |
| 62 |
2 |
0.000495 |
| 85 |
2 |
0.000523 |
| 119 |
2 |
0.000501 |
| 330 |
2 |
0.000561 |
| 10000 |
2 |
0.000564 |
| 11100 |
2 |
0.000564 |
| 12100 |
2 |
0.000564 |
| 13400 |
2 |
0.000564 |
| 18000 |
2 |
0.000564 |
| 38800 |
2 |
0.000564 |
| 42600 |
2 |
0.000564 |
| 45600 |
2 |
0.000564 |
| 3 |
1 |
0.000174 |
| 15 |
1 |
0.000222 |
| 20 |
1 |
0.000193 |
| 33 |
1 |
0.000229 |
| 34 |
1 |
0.00025 |
| 37 |
1 |
0.000222 |
| 38 |
1 |
0.000246 |
| 46 |
1 |
0.00021 |
| 57 |
1 |
0.000215 |
| 70 |
1 |
0.000249 |
| 73 |
1 |
0.000226 |
| 74 |
1 |
0.000262 |
| 79 |
1 |
0.000255 |
| 92 |
1 |
0.000267 |
| 94 |
1 |
0.00023 |
| 96 |
1 |
0.000243 |
| 97 |
1 |
0.000251 |
| 98 |
1 |
0.000233 |
| 99 |
1 |
0.000238 |
| 100 |
1 |
0.000261 |
| 106 |
1 |
0.000266 |
| 110 |
1 |
0.000236 |
| 111 |
1 |
0.000263 |
| 112 |
1 |
0.00024 |
| 125 |
1 |
0.00026 |
| 127 |
1 |
0.00027 |
| 129 |
1 |
0.000262 |
| 136 |
1 |
0.000271 |
| 137 |
1 |
0.000256 |
| 143 |
1 |
0.000268 |
| 168 |
1 |
0.000272 |
| 178 |
1 |
0.000276 |
| 483 |
1 |
0.000281 |
| 485 |
1 |
0.000281 |
| 723 |
1 |
0.000282 |
| 885 |
1 |
0.000282 |
| 2220 |
1 |
0.000282 |
| 2470 |
1 |
0.000282 |
| 3460 |
1 |
0.000282 |
| 5600 |
1 |
0.000282 |
| 6510 |
1 |
0.000282 |
| 7330 |
1 |
0.000282 |
| 7440 |
1 |
0.000282 |
| 7460 |
1 |
0.000282 |
| 7470 |
1 |
0.000282 |
| 8750 |
1 |
0.000282 |
| 8860 |
1 |
0.000282 |
| 8870 |
1 |
0.000282 |
| 9190 |
1 |
0.000282 |
| 9200 |
1 |
0.000282 |
| 9530 |
1 |
0.000282 |
| 9640 |
1 |
0.000282 |
| 10800 |
1 |
0.000282 |
| 11700 |
1 |
0.000282 |
| 12600 |
1 |
0.000282 |
| 13700 |
1 |
0.000282 |
| 15300 |
1 |
0.000282 |
| 15600 |
1 |
0.000282 |
| 18700 |
1 |
0.000282 |
| 19200 |
1 |
0.000282 |
| 19700 |
1 |
0.000282 |
| 19800 |
1 |
0.000282 |
| 20300 |
1 |
0.000282 |
| 20500 |
1 |
0.000282 |
| 22400 |
1 |
0.000282 |
| 22700 |
1 |
0.000282 |
| 23600 |
1 |
0.000282 |
| 25700 |
1 |
0.000282 |
| 28100 |
1 |
0.000282 |
| 34400 |
1 |
0.000282 |
| 36600 |
1 |
0.000282 |
| 40100 |
1 |
0.000282 |
| 46300 |
1 |
0.000282 |
| 47500 |
1 |
0.000282 |
| 47700 |
1 |
0.000282 |
|
CL6 ----> CL1
No. of shared pairs: :2282
CL6 ----> CL4
No. of shared pairs: :1492
CL6 ----> CL31
No. of shared pairs: :727
CL6 ----> CL61
No. of shared pairs: :673
CL6 ----> CL108
No. of shared pairs: :619
CL6 ----> CL19
No. of shared pairs: :176
CL6 ----> CL5
No. of shared pairs: :172
CL6 ----> CL29
No. of shared pairs: :98
CL6 ----> CL21
No. of shared pairs: :39
CL6 ----> CL12
No. of shared pairs: :36
CL6 ----> CL142
No. of shared pairs: :27
CL6 ----> CL115
No. of shared pairs: :20
CL6 ----> CL32
No. of shared pairs: :15
CL6 ----> CL51
No. of shared pairs: :14
CL6 ----> CL2
No. of shared pairs: :12
CL6 ----> CL7
No. of shared pairs: :11