Cluster no. 4
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Cluster is part of supercluster: 1
Cluster characteristics:
| size |
14024 |
| size_real |
14024 |
| ecount |
680245 |
| supercluster |
1 |
| annotations_summary |
0.02% Class_I/LINE:LINE-ENDO
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.01% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.01% Class_II/Subclass_1/TIR/PIF_Harbinger:Harbinger-TPase
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
0.01% Class_I/LINE:LINE-RT
0.01% Class_I/pararetrovirus:PARA-RT
|
| pair_completeness |
0.378822141382362 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00121220764403879 |
| satellite_probability |
7.55887620545779e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
4700 |
| S4 |
4670 |
| S6 |
4660 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
77700 |
75300 |
77000 |
| S4 |
75300 |
72800 |
74500 |
| S6 |
77000 |
74500 |
76100 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.999 |
1 |
1.000 |
| S4 |
1.000 |
1 |
1.000 |
| S6 |
1.000 |
1 |
0.999 |
protein domains:
protein domains:
Reads annotation summary
| |
cl_string |
domain |
Freq |
proportion |
| plastid
|
plastid
|
|
2
|
1.4e-04
|
| PIF_Harbinger Harbinger-TPase
|
PIF_Harbinger
|
Harbinger-TPase
|
1
|
7.1e-05
|
| LINE LINE-ENDO
|
LINE
|
LINE-ENDO
|
3
|
2.1e-04
|
| LINE LINE-RT
|
LINE
|
LINE-RT
|
1
|
7.1e-05
|
| MuDR_Mutator MuDR-TPase
|
MuDR_Mutator
|
MuDR-TPase
|
1
|
7.1e-05
|
| pararetrovirus PARA-RT
|
pararetrovirus
|
PARA-RT
|
1
|
7.1e-05
|
| TAR Ty1-INT
|
TAR
|
Ty1-INT
|
1
|
7.1e-05
|
| Ty1-outgroup Ty1-INT
|
Ty1-outgroup
|
Ty1-INT
|
1
|
7.1e-05
|
| Ale Ty1-RT
|
Ale
|
Ty1-RT
|
2
|
1.4e-04
|
| TatIV_Ogre Ty3-INT
|
TatIV_Ogre
|
Ty3-INT
|
2
|
1.4e-04
|
| Athila Ty3-RH
|
Athila
|
Ty3-RH
|
1
|
7.1e-05
|
| TatV Ty3-aRH
|
TatV
|
Ty3-aRH
|
2
|
1.4e-04
|
| hAT hAT-TPase
|
hAT
|
hAT-TPase
|
1
|
7.1e-05
|
|
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 21 |
27400 |
| 6 |
7800 |
| 31 |
5250 |
| 5 |
4150 |
| 108 |
3480 |
| 26 |
1510 |
| 71 |
911 |
| 12 |
441 |
| 51 |
411 |
| 8 |
53 |
| 61 |
35 |
| 29 |
18 |
| 3 |
10 |
| 19 |
9 |
| 115 |
7 |
| 242 |
7 |
| 133 |
2 |
| 59 |
1 |
| 84 |
1 |
| 127 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 6 |
1490 |
0.223 |
| 21 |
1220 |
0.226 |
| 5 |
1050 |
0.196 |
| 12 |
559 |
0.0947 |
| 31 |
256 |
0.0593 |
| 71 |
217 |
0.0558 |
| 19 |
129 |
0.0276 |
| 29 |
106 |
0.0198 |
| 108 |
90 |
0.0231 |
| 1 |
82 |
0.0127 |
| 51 |
59 |
0.0141 |
| 61 |
41 |
0.00943 |
| 63 |
39 |
0.00907 |
| 7 |
18 |
0.00339 |
| 13 |
18 |
0.00391 |
| 50 |
18 |
0.00445 |
| 26 |
15 |
0.00289 |
| 10 |
10 |
0.00186 |
| 30 |
10 |
0.00209 |
| 35 |
9 |
0.00215 |
| 2 |
8 |
0.00128 |
| 8 |
8 |
0.00154 |
| 32 |
7 |
0.00156 |
| 115 |
7 |
0.0019 |
| 16 |
6 |
0.00142 |
| 27 |
6 |
0.00148 |
| 56 |
6 |
0.00139 |
| 62 |
5 |
0.00137 |
| 119 |
5 |
0.00139 |
| 168 |
5 |
0.00152 |
| 11 |
4 |
0.000756 |
| 49 |
4 |
0.000932 |
| 59 |
4 |
0.000981 |
| 64 |
4 |
0.000949 |
| 107 |
4 |
0.00119 |
| 3 |
3 |
0.000561 |
| 9 |
3 |
0.000699 |
| 41 |
3 |
0.000706 |
| 45 |
3 |
0.00072 |
| 83 |
3 |
0.000706 |
| 113 |
3 |
0.000835 |
| 242 |
3 |
0.000936 |
| 2310 |
3 |
0.000949 |
| 6610 |
3 |
0.000949 |
| 17 |
2 |
0.00043 |
| 23 |
2 |
0.000364 |
| 25 |
2 |
0.00053 |
| 38 |
2 |
0.000543 |
| 46 |
2 |
0.000457 |
| 57 |
2 |
0.000468 |
| 58 |
2 |
0.00046 |
| 77 |
2 |
0.000504 |
| 80 |
2 |
0.000598 |
| 84 |
2 |
0.000518 |
| 85 |
2 |
0.000582 |
| 94 |
2 |
0.000504 |
| 98 |
2 |
0.000511 |
| 120 |
2 |
0.000568 |
| 129 |
2 |
0.000582 |
| 136 |
2 |
0.000606 |
| 142 |
2 |
0.000567 |
| 178 |
2 |
0.000618 |
| 14500 |
2 |
0.000633 |
| 28400 |
2 |
0.000633 |
| 37500 |
2 |
0.000633 |
| 40200 |
2 |
0.000633 |
| 44300 |
2 |
0.000633 |
| 47300 |
2 |
0.000633 |
| 14 |
1 |
0.000232 |
| 28 |
1 |
0.000208 |
| 33 |
1 |
0.000251 |
| 40 |
1 |
0.000249 |
| 47 |
1 |
0.000253 |
| 54 |
1 |
0.00024 |
| 60 |
1 |
0.000292 |
| 70 |
1 |
0.000275 |
| 72 |
1 |
0.000241 |
| 73 |
1 |
0.000247 |
| 78 |
1 |
0.000269 |
| 81 |
1 |
0.000243 |
| 87 |
1 |
0.000267 |
| 89 |
1 |
0.000289 |
| 96 |
1 |
0.000268 |
| 100 |
1 |
0.00029 |
| 104 |
1 |
0.000262 |
| 106 |
1 |
0.000296 |
| 111 |
1 |
0.000293 |
| 112 |
1 |
0.000265 |
| 114 |
1 |
0.000291 |
| 116 |
1 |
0.000313 |
| 118 |
1 |
0.000313 |
| 127 |
1 |
0.000301 |
| 132 |
1 |
0.000302 |
| 133 |
1 |
0.000302 |
| 138 |
1 |
0.000293 |
| 149 |
1 |
0.000302 |
| 221 |
1 |
0.000313 |
| 234 |
1 |
0.000313 |
| 311 |
1 |
0.000314 |
| 373 |
1 |
0.000315 |
| 1870 |
1 |
0.000316 |
| 5000 |
1 |
0.000316 |
| 5160 |
1 |
0.000316 |
| 6710 |
1 |
0.000316 |
| 6710 |
1 |
0.000316 |
| 7970 |
1 |
0.000316 |
| 9220 |
1 |
0.000316 |
| 10000 |
1 |
0.000316 |
| 10600 |
1 |
0.000316 |
| 11800 |
1 |
0.000316 |
| 12500 |
1 |
0.000317 |
| 12800 |
1 |
0.000316 |
| 13700 |
1 |
0.000316 |
| 14500 |
1 |
0.000316 |
| 16400 |
1 |
0.000316 |
| 17800 |
1 |
0.000316 |
| 20200 |
1 |
0.000316 |
| 20300 |
1 |
0.000316 |
| 22300 |
1 |
0.000316 |
| 22700 |
1 |
0.000316 |
| 22900 |
1 |
0.000316 |
| 25700 |
1 |
0.000316 |
| 28300 |
1 |
0.000316 |
| 29900 |
1 |
0.000316 |
| 33600 |
1 |
0.000316 |
| 34200 |
1 |
0.000316 |
| 34600 |
1 |
0.000316 |
| 34700 |
1 |
0.000316 |
| 36600 |
1 |
0.000316 |
| 37300 |
1 |
0.000316 |
| 44500 |
1 |
0.000316 |
| 46300 |
1 |
0.000316 |
| 47500 |
1 |
0.000316 |
|
CL4 ----> CL6
No. of shared pairs: :1492
CL4 ----> CL21
No. of shared pairs: :1222
CL4 ----> CL5
No. of shared pairs: :1052
CL4 ----> CL12
No. of shared pairs: :559
CL4 ----> CL31
No. of shared pairs: :256
CL4 ----> CL71
No. of shared pairs: :217
CL4 ----> CL19
No. of shared pairs: :129
CL4 ----> CL29
No. of shared pairs: :106
CL4 ----> CL108
No. of shared pairs: :90
CL4 ----> CL1
No. of shared pairs: :82
CL4 ----> CL51
No. of shared pairs: :59
CL4 ----> CL61
No. of shared pairs: :41
CL4 ----> CL63
No. of shared pairs: :39
CL4 ----> CL7
No. of shared pairs: :18
CL4 ----> CL13
No. of shared pairs: :18
CL4 ----> CL50
No. of shared pairs: :18
CL4 ----> CL26
No. of shared pairs: :15
CL4 ----> CL10
No. of shared pairs: :10
CL4 ----> CL30
No. of shared pairs: :10