Cluster no. 3

Cluster no. 3

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Cluster is part of supercluster: 2

Cluster characteristics:

size	14354
size_real	14354
ecount	2368736
supercluster	2
annotations_summary	0.01% organelle/plastid 0.01% Class_II/Subclass_2/Helitron:Helitron-HEL2 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.01% Class_I/LTR/Ty1_copia/Osser:Ty1-RT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
pair_completeness	0.532237403928266
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0140727323394176
satellite_probability	6.30293069200862e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	4940
S4	4700
S6	4710

comparative analysis - number of edges between species:

	S5	S4	S6
S5	282000	265000	271000
S4	265000	249000	253000
S6	271000	253000	259000

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.999	0.999	1.000
S4	0.999	1.000	0.998
S6	1.000	0.998	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 2 0.00014

Helitron Helitron-HEL2 Helitron Helitron-HEL2 2 0.00014

Ale Ty1-INT Ale Ty1-INT 1 0.00007

Ale Ty1-RT Ale Ty1-RT 1 0.00007

Osser Ty1-RT Osser Ty1-RT 1 0.00007

Tekay Ty3-INT Tekay Ty3-INT 1 0.00007

Tekay Ty3-PROT Tekay Ty3-PROT 1 0.00007

clusters with similarity:

Cluster	Number of similarity hits

26	101000
18	12900
96	1630
5	1010
24	704
117	345
4	10
31	2
7	1
32	1
85	1
142	1
198	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

26	1820	0.43
18	1270	0.373
96	468	0.169
24	340	0.103
117	69	0.0257
12	49	0.00992
32	11	0.00313
7	10	0.00231
13	10	0.00275
16	5	0.00154
59	5	0.00161
63	5	0.0015
5	4	0.000908
17	4	0.00109
19	4	0.00108
56	4	0.0012
1	3	0.000544
4	3	0.000561
49	3	0.000903
76	3	0.00112
132	3	0.00128
10	2	0.000453
11	2	0.000463
27	2	0.000647
29	2	0.000455
31	2	0.000598
58	2	0.000592
70	2	0.000748
103	2	0.000686
136	2	0.000857
3800	2	0.000912
19500	2	0.000912
21000	2	0.000912
6	1	0.000174
9	1	0.000301
14	1	0.000299
15	1	0.000317
20	1	0.000261
22	1	0.000334
23	1	0.000221
36	1	0.000308
38	1	0.000369
41	1	0.000305
45	1	0.000312
46	1	0.000293
50	1	0.000325
51	1	0.000311
52	1	0.000332
54	1	0.000313
55	1	0.000311
57	1	0.000302
62	1	0.000371
71	1	0.000343
77	1	0.000334
78	1	0.000363
79	1	0.000388
87	1	0.00036
89	1	0.000402
94	1	0.000334
97	1	0.000379
99	1	0.00035
100	1	0.000404
101	1	0.000381
105	1	0.00038
120	1	0.000391
121	1	0.000387
124	1	0.000451
128	1	0.000426
134	1	0.000407
142	1	0.00039
146	1	0.000451
153	1	0.000428
154	1	0.000453
172	1	0.000444
198	1	0.00045
247	1	0.000452
488	1	0.000456
508	1	0.000454
1640	1	0.000455
5170	1	0.000456
5450	1	0.000456
5760	1	0.000456
8540	1	0.000456
28000	1	0.000456
35500	1	0.000456
41400	1	0.000456
42700	1	0.000456

CL3 ----> CL26

No. of shared pairs: :1821

CL3 ----> CL18

No. of shared pairs: :1271

CL3 ----> CL96

No. of shared pairs: :468

CL3 ----> CL24

No. of shared pairs: :340

CL3 ----> CL117

No. of shared pairs: :69

CL3 ----> CL12

No. of shared pairs: :49

CL3 ----> CL32

No. of shared pairs: :11

CL3 ----> CL7

No. of shared pairs: :10

CL3 ----> CL13

No. of shared pairs: :10