Cluster no. 2
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Cluster is part of supercluster: 1
Cluster characteristics:
| size |
15735 |
| size_real |
15735 |
| ecount |
334640 |
| supercluster |
1 |
| annotations_summary |
0.08% organelle/mitochondria
0.08% organelle/plastid
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.01% Class_I/LINE:LINE-RT
0.01% Class_I/LINE:LINE-ENDO
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
|
| pair_completeness |
0.435806186695866 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.132634254845885 |
| satellite_probability |
2.29899331061173e-14 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
5290 |
| S4 |
5290 |
| S6 |
5150 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
36200 |
38100 |
35700 |
| S4 |
38100 |
40100 |
37700 |
| S6 |
35700 |
37700 |
35500 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.000 |
1.000 |
0.997 |
| S4 |
1.000 |
0.999 |
1.000 |
| S6 |
0.997 |
1.000 |
1.000 |
protein domains:
protein domains:
Reads annotation summary
| |
cl_string |
domain |
Freq |
proportion |
| mitochondria
|
mitochondria
|
|
12
|
7.6e-04
|
| plastid
|
plastid
|
|
12
|
7.6e-04
|
| LINE LINE-ENDO
|
LINE
|
LINE-ENDO
|
1
|
6.4e-05
|
| LINE LINE-RT
|
LINE
|
LINE-RT
|
1
|
6.4e-05
|
| TAR Ty1-INT
|
TAR
|
Ty1-INT
|
1
|
6.4e-05
|
| Ale Ty1-RH
|
Ale
|
Ty1-RH
|
1
|
6.4e-05
|
| Tekay Ty3-INT
|
Tekay
|
Ty3-INT
|
10
|
6.4e-04
|
|
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 1 |
10900 |
| 61 |
4380 |
| 7 |
4260 |
| 19 |
998 |
| 63 |
960 |
| 10 |
901 |
| 142 |
694 |
| 81 |
376 |
| 48 |
353 |
| 184 |
58 |
| 84 |
30 |
| 27 |
27 |
| 24 |
23 |
| 119 |
17 |
| 104 |
14 |
| 98 |
11 |
| 49 |
7 |
| 100 |
5 |
| 6 |
1 |
| 20 |
1 |
| 54 |
1 |
| 79 |
1 |
| 120 |
1 |
| 132 |
1 |
| 338 |
1 |
| 358 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 1 |
1140 |
0.178 |
| 10 |
681 |
0.128 |
| 81 |
559 |
0.138 |
| 61 |
401 |
0.0937 |
| 19 |
216 |
0.047 |
| 48 |
206 |
0.0534 |
| 63 |
138 |
0.0326 |
| 7 |
107 |
0.0204 |
| 84 |
78 |
0.0206 |
| 142 |
78 |
0.0225 |
| 98 |
69 |
0.0179 |
| 27 |
52 |
0.013 |
| 184 |
52 |
0.0164 |
| 100 |
37 |
0.011 |
| 119 |
36 |
0.0102 |
| 104 |
29 |
0.00773 |
| 49 |
28 |
0.00663 |
| 5 |
22 |
0.00415 |
| 12 |
17 |
0.00291 |
| 358 |
16 |
0.00514 |
| 32 |
14 |
0.00317 |
| 6 |
12 |
0.00181 |
| 13 |
12 |
0.00265 |
| 77 |
11 |
0.00282 |
| 54 |
10 |
0.00244 |
| 72 |
9 |
0.0022 |
| 4 |
8 |
0.00128 |
| 16 |
8 |
0.00193 |
| 20 |
8 |
0.00169 |
| 9 |
7 |
0.00166 |
| 24 |
7 |
0.00166 |
| 30 |
7 |
0.00149 |
| 33 |
7 |
0.00179 |
| 35 |
7 |
0.0017 |
| 85 |
7 |
0.00208 |
| 28 |
6 |
0.00127 |
| 34 |
6 |
0.00169 |
| 56 |
6 |
0.00142 |
| 58 |
6 |
0.0014 |
| 79 |
6 |
0.00172 |
| 648 |
6 |
0.00193 |
| 11 |
5 |
0.000958 |
| 17 |
5 |
0.00109 |
| 120 |
5 |
0.00145 |
| 67 |
4 |
0.00114 |
| 80 |
4 |
0.00122 |
| 338 |
4 |
0.00129 |
| 729 |
4 |
0.00129 |
| 2340 |
4 |
0.00129 |
| 15 |
3 |
0.000739 |
| 23 |
3 |
0.000552 |
| 25 |
3 |
0.00081 |
| 37 |
3 |
0.000738 |
| 39 |
3 |
0.000782 |
| 57 |
3 |
0.000713 |
| 73 |
3 |
0.000755 |
| 107 |
3 |
0.00091 |
| 115 |
3 |
0.000831 |
| 132 |
3 |
0.000925 |
| 137 |
3 |
0.000867 |
| 5400 |
3 |
0.00097 |
| 5880 |
3 |
0.00097 |
| 9600 |
3 |
0.00097 |
| 18 |
2 |
0.000464 |
| 22 |
2 |
0.000513 |
| 31 |
2 |
0.000471 |
| 36 |
2 |
0.000482 |
| 40 |
2 |
0.000507 |
| 41 |
2 |
0.000479 |
| 42 |
2 |
0.000499 |
| 45 |
2 |
0.000488 |
| 52 |
2 |
0.000511 |
| 59 |
2 |
0.000499 |
| 60 |
2 |
0.000596 |
| 65 |
2 |
0.000542 |
| 78 |
2 |
0.000548 |
| 94 |
2 |
0.000513 |
| 96 |
2 |
0.000546 |
| 97 |
2 |
0.000565 |
| 121 |
2 |
0.000574 |
| 147 |
2 |
0.000599 |
| 168 |
2 |
0.00062 |
| 1370 |
2 |
0.000646 |
| 1490 |
2 |
0.000646 |
| 1640 |
2 |
0.000646 |
| 3800 |
2 |
0.000646 |
| 4460 |
2 |
0.000646 |
| 5190 |
2 |
0.000647 |
| 5280 |
2 |
0.000647 |
| 5850 |
2 |
0.000647 |
| 6130 |
2 |
0.000647 |
| 7120 |
2 |
0.000647 |
| 7130 |
2 |
0.000647 |
| 8550 |
2 |
0.000647 |
| 8880 |
2 |
0.000647 |
| 9220 |
2 |
0.000647 |
| 9920 |
2 |
0.000647 |
| 15700 |
2 |
0.000647 |
| 17000 |
2 |
0.000647 |
| 17500 |
2 |
0.000647 |
| 18700 |
2 |
0.000647 |
| 21300 |
2 |
0.000647 |
| 23400 |
2 |
0.000647 |
| 24000 |
2 |
0.000647 |
| 26200 |
2 |
0.000647 |
| 26200 |
2 |
0.000647 |
| 27000 |
2 |
0.000647 |
| 32900 |
2 |
0.000647 |
| 33300 |
2 |
0.000647 |
| 33300 |
2 |
0.000647 |
| 33600 |
2 |
0.000647 |
| 36300 |
2 |
0.000647 |
| 37300 |
2 |
0.000647 |
| 38100 |
2 |
0.000647 |
| 38900 |
2 |
0.000647 |
| 41000 |
2 |
0.000647 |
| 41200 |
2 |
0.000647 |
| 41800 |
2 |
0.000647 |
| 45200 |
2 |
0.000647 |
| 45300 |
2 |
0.000647 |
| 8 |
1 |
0.000196 |
| 21 |
1 |
0.000187 |
| 29 |
1 |
0.000189 |
| 38 |
1 |
0.000277 |
| 44 |
1 |
0.000276 |
| 46 |
1 |
0.000232 |
| 50 |
1 |
0.000251 |
| 51 |
1 |
0.000243 |
| 55 |
1 |
0.000243 |
| 64 |
1 |
0.000241 |
| 69 |
1 |
0.000266 |
| 71 |
1 |
0.000262 |
| 75 |
1 |
0.000278 |
| 82 |
1 |
0.000264 |
| 86 |
1 |
0.000271 |
| 89 |
1 |
0.000295 |
| 90 |
1 |
0.000279 |
| 93 |
1 |
0.000277 |
| 101 |
1 |
0.000284 |
| 108 |
1 |
0.000261 |
| 111 |
1 |
0.000299 |
| 113 |
1 |
0.000284 |
| 125 |
1 |
0.000294 |
| 135 |
1 |
0.000307 |
| 151 |
1 |
0.000312 |
| 153 |
1 |
0.000309 |
| 160 |
1 |
0.000322 |
| 165 |
1 |
0.000312 |
| 173 |
1 |
0.000309 |
| 180 |
1 |
0.000312 |
| 182 |
1 |
0.000312 |
| 183 |
1 |
0.000319 |
| 189 |
1 |
0.000316 |
| 218 |
1 |
0.000317 |
| 239 |
1 |
0.000321 |
| 260 |
1 |
0.00032 |
| 311 |
1 |
0.000321 |
| 332 |
1 |
0.000322 |
| 379 |
1 |
0.000322 |
| 402 |
1 |
0.000322 |
| 427 |
1 |
0.000322 |
| 484 |
1 |
0.000322 |
| 486 |
1 |
0.000322 |
| 508 |
1 |
0.000322 |
| 532 |
1 |
0.000322 |
| 778 |
1 |
0.000323 |
| 802 |
1 |
0.000323 |
| 803 |
1 |
0.000323 |
| 1220 |
1 |
0.000323 |
| 1280 |
1 |
0.000323 |
| 1550 |
1 |
0.000323 |
| 1550 |
1 |
0.000323 |
| 1690 |
1 |
0.000323 |
| 2040 |
1 |
0.000323 |
| 2570 |
1 |
0.000323 |
| 2620 |
1 |
0.000323 |
| 2680 |
1 |
0.000323 |
| 2760 |
1 |
0.000323 |
| 3180 |
1 |
0.000323 |
| 3780 |
1 |
0.000323 |
| 3840 |
1 |
0.000323 |
| 4040 |
1 |
0.000323 |
| 4280 |
1 |
0.000323 |
| 4580 |
1 |
0.000323 |
| 5140 |
1 |
0.000323 |
| 5250 |
1 |
0.000323 |
| 5310 |
1 |
0.000323 |
| 5320 |
1 |
0.000323 |
| 5830 |
1 |
0.000323 |
| 6070 |
1 |
0.000323 |
| 6210 |
1 |
0.000323 |
| 6300 |
1 |
0.000323 |
| 6670 |
1 |
0.000323 |
| 6950 |
1 |
0.000323 |
| 7100 |
1 |
0.000323 |
| 7560 |
1 |
0.000323 |
| 8350 |
1 |
0.000323 |
| 8640 |
1 |
0.000323 |
| 8680 |
1 |
0.000323 |
| 8950 |
1 |
0.000323 |
| 9440 |
1 |
0.000323 |
| 9670 |
1 |
0.000323 |
| 9690 |
1 |
0.000323 |
| 9900 |
1 |
0.000323 |
| 10300 |
1 |
0.000323 |
| 10400 |
1 |
0.000323 |
| 10500 |
1 |
0.000323 |
| 11100 |
1 |
0.000323 |
| 11300 |
1 |
0.000323 |
| 11800 |
1 |
0.000323 |
| 11900 |
1 |
0.000323 |
| 12000 |
1 |
0.000323 |
| 12100 |
1 |
0.000323 |
| 12200 |
1 |
0.000323 |
| 12300 |
1 |
0.000323 |
| 12600 |
1 |
0.000323 |
| 12600 |
1 |
0.000323 |
| 13100 |
1 |
0.000323 |
| 13200 |
1 |
0.000323 |
| 13300 |
1 |
0.000323 |
| 13600 |
1 |
0.000323 |
| 14200 |
1 |
0.000323 |
| 14400 |
1 |
0.000323 |
| 16000 |
1 |
0.000323 |
| 16400 |
1 |
0.000323 |
| 17500 |
1 |
0.000323 |
| 17900 |
1 |
0.000323 |
| 18100 |
1 |
0.000323 |
| 19200 |
1 |
0.000323 |
| 19300 |
1 |
0.000323 |
| 19600 |
1 |
0.000323 |
| 19900 |
1 |
0.000323 |
| 19900 |
1 |
0.000323 |
| 20100 |
1 |
0.000323 |
| 20900 |
1 |
0.000323 |
| 20900 |
1 |
0.000323 |
| 21100 |
1 |
0.000323 |
| 21600 |
1 |
0.000323 |
| 21600 |
1 |
0.000323 |
| 21800 |
1 |
0.000323 |
| 21900 |
1 |
0.000323 |
| 22000 |
1 |
0.000323 |
| 22100 |
1 |
0.000323 |
| 22200 |
1 |
0.000323 |
| 22300 |
1 |
0.000323 |
| 24300 |
1 |
0.000323 |
| 24600 |
1 |
0.000323 |
| 24900 |
1 |
0.000323 |
| 25500 |
1 |
0.000323 |
| 26000 |
1 |
0.000323 |
| 26200 |
1 |
0.000323 |
| 27500 |
1 |
0.000323 |
| 28000 |
1 |
0.000323 |
| 28200 |
1 |
0.000323 |
| 29400 |
1 |
0.000323 |
| 29800 |
1 |
0.000323 |
| 29900 |
1 |
0.000323 |
| 31300 |
1 |
0.000323 |
| 32600 |
1 |
0.000323 |
| 33100 |
1 |
0.000323 |
| 33100 |
1 |
0.000323 |
| 33600 |
1 |
0.000323 |
| 33600 |
1 |
0.000323 |
| 34200 |
1 |
0.000323 |
| 34700 |
1 |
0.000323 |
| 34700 |
1 |
0.000323 |
| 34800 |
1 |
0.000323 |
| 35000 |
1 |
0.000323 |
| 35100 |
1 |
0.000323 |
| 35300 |
1 |
0.000323 |
| 36300 |
1 |
0.000323 |
| 36700 |
1 |
0.000323 |
| 36700 |
1 |
0.000323 |
| 37000 |
1 |
0.000323 |
| 37900 |
1 |
0.000323 |
| 39600 |
1 |
0.000323 |
| 39800 |
1 |
0.000323 |
| 39800 |
1 |
0.000323 |
| 40800 |
1 |
0.000323 |
| 41400 |
1 |
0.000323 |
| 41700 |
1 |
0.000323 |
| 42600 |
1 |
0.000323 |
| 42700 |
1 |
0.000323 |
| 44500 |
1 |
0.000323 |
| 45600 |
1 |
0.000323 |
| 45600 |
1 |
0.000323 |
| 45800 |
1 |
0.000323 |
| 46000 |
1 |
0.000323 |
| 46000 |
1 |
0.000323 |
| 46100 |
1 |
0.000323 |
| 46300 |
1 |
0.000323 |
| 46400 |
1 |
0.000323 |
| 46800 |
1 |
0.000323 |
| 46800 |
1 |
0.000323 |
| 47600 |
1 |
0.000323 |
|
CL2 ----> CL1
No. of shared pairs: :1141
CL2 ----> CL10
No. of shared pairs: :681
CL2 ----> CL81
No. of shared pairs: :559
CL2 ----> CL61
No. of shared pairs: :401
CL2 ----> CL19
No. of shared pairs: :216
CL2 ----> CL48
No. of shared pairs: :206
CL2 ----> CL63
No. of shared pairs: :138
CL2 ----> CL7
No. of shared pairs: :107
CL2 ----> CL84
No. of shared pairs: :78
CL2 ----> CL142
No. of shared pairs: :78
CL2 ----> CL98
No. of shared pairs: :69
CL2 ----> CL27
No. of shared pairs: :52
CL2 ----> CL184
No. of shared pairs: :52
CL2 ----> CL100
No. of shared pairs: :37
CL2 ----> CL119
No. of shared pairs: :36
CL2 ----> CL104
No. of shared pairs: :29
CL2 ----> CL49
No. of shared pairs: :28
CL2 ----> CL5
No. of shared pairs: :22
CL2 ----> CL12
No. of shared pairs: :17
CL2 ----> CL358
No. of shared pairs: :16
CL2 ----> CL32
No. of shared pairs: :14
CL2 ----> CL6
No. of shared pairs: :12
CL2 ----> CL13
No. of shared pairs: :12
CL2 ----> CL77
No. of shared pairs: :11
CL2 ----> CL54
No. of shared pairs: :10