Supplementary files:
File S1 - Consensus sequences of long tandem repeats
File S2 - comparative RepeatExplorer2 HTML report (TAREAN included)
File S3 - RepeatExplorer2 archive with HTML report - download
File S4 - annotated contigs from comparative analysis - download
File S5 - plastid contigs from A. cepa - download
File S6 - plastid contigs from A. ursinum - download
File S7 - plastid contigs from A. sativum - download
File S8 - annotated contigs from A. cepa analysis - download
File S9 - annotated contigs from A. ursinum analysis - download
File S10 - annotated contigs from A. sativum analysis - download
File S11 - A. cepa RepeatExplorer2 HTML report (TAREAN included)
File S14 - RepeatExplorer2 archive with HTML report - download
File S12 - A. ursinum RepeatExplorer2 HTML report (TAREAN included)
File S15 - RepeatExplorer2 archive with HTML report - download
File S13 - A. sativum RepeatExplorer2 HTML report (TAREAN included)
File S16 - RepeatExplorer2 archive with HTML report - download
File S17 - 45S rDNA clusters merging in A. cepa (archive download)
File S18 - RepeatExplorer2 input - download
File S19 - RepeatExplorer2 input - download
File S20 - RepeatExplorer2 input - download
File S21 - RepeatExplorer2 input - download

Supplementary figures:
Figure S1
download
Figure S2
download
Figure S3
download
Figure S4
download
Figure S5
download
Figure S6
download

Supplementary tables:
Table S1 - download
Table S2 - download
Table S3 - download
Table S4 - download
Table S5 - download
Table S6 - download
Table S7 - download
Table S8 - download
Table S9 - download